This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330412 (40 seq.)
>W1711147539
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55547
55622
+
Lys
CTT
[ENA]
¡û
>W1711387160
MEGJ01000004
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
51601
51676
+
Lys
CTT
[ENA]
¡û
>W1711506093
MKWC01000008
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
151832
151907
+
Lys
CTT
[ENA]
¡û
>W1711751325
MUNQ01000022
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
13802
13727
-
Lys
CTT
[ENA]
¡û
>W1711751438
MUNT01000006
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
85245
85320
+
Lys
CTT
[ENA]
¡û
>W1711751469
MUNU01000003
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
87272
87347
+
Lys
CTT
[ENA]
¡û
>C171063401
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
15824
15749
-
Lys
CTT
-
¡û
>W131219018
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
220783
220858
+
Lys
CTT
[ENA]
¡û
>WENV180035898
FTLB01043406
[FTLB] metagenome; soil
1561
1486
-
Lys
CTT
[ENA]
¢þ
>WENV180099638
NMRC01022055
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3123
3048
-
Lys
CTT
[ENA]
¢þ
>WENV181401804
OFTX01007288
[OFTX] sludge metagenome; sludge
833
758
-
Lys
CTT
[ENA]
¢þ
>WENV170659764
JXWR01082593
[JXWR] soil metagenome; rice field; ambient CO2
89
14
-
Lys
CTT
[ENA]
¢þ
>WENV170706010
LNAP01000839
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8396
8471
+
Lys
CTT
[ENA]
¢þ
>W141820711
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
4116281
4116206
-
Lys
CTT
[ENA]
¡û
>W141820789
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
1660499
1660574
+
Lys
CTT
[ENA]
¡û
>W141821284
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
706792
706717
-
Lys
CTT
[ENA]
¡û
>W1911199821
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
33815
33740
-
Lys
CTT
[ENA]
¡û
>W1810071356
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
523296
523371
+
Lys
CTT
[ENA]
¡û
>W1810477578
QAOX01000006
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
289514
289439
-
Lys
CTT
[ENA]
¡û
>W1810485578
QAVX01000010
Gammaproteobacteria
Dyella sp. C11 [QAVX]
5870
5795
-
Lys
CTT
[ENA]
¡û
>C151023751
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2417053
2416978
-
Lys
CTT
[Ensembl]
¡û
>W1511305060
JPLA01000022
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
112557
112632
+
Lys
CTT
[ENA]
¡û
>W1511305113
JPLB01000053
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
86829
86754
-
Lys
CTT
[ENA]
¡û
>W1511305283
JPLD01000306
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
5682
5757
+
Lys
CTT
[ENA]
¡û
>W1511433914
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2770777
2770702
-
Lys
CTT
[ENA]
¡û
>W1511547559
JZRB01000003
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
131877
131802
-
Lys
CTT
[ENA]
¡û
>W11180891
AGIL01000007
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
79619
79694
+
Lys
CTT
[ENA]
¡û
>C121011593
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980554
1980479
-
Lys
CTT
[Ensembl]
¡û
>C121011596
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1980110
1980035
-
Lys
CTT
[Ensembl]
¡û
>C121011598
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1979782
1979707
-
Lys
CTT
[Ensembl]
¡û
>W121017565
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720057
720132
+
Lys
CTT
[ENA]
¡û
>W121017568
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720501
720576
+
Lys
CTT
[ENA]
¡û
>W121017570
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
720829
720904
+
Lys
CTT
[ENA]
¡û
>W121071218
AJXS01000394
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
11974
11899
-
Lys
CTT
[ENA]
¡û
>W121113879
ALOY01000118
Gammaproteobacteria
Dyella japonica A8 [ALOY]
12750
12675
-
Lys
CTT
[ENA]
¡û
>W1610958492
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55547
55622
+
Lys
CTT
[ENA]
¡û
>W1710567368
FOSR01000015
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
75054
74979
-
Lys
CTT
[ENA]
¡û
>W1710579657
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
1147168
1147093
-
Lys
CTT
[ENA]
¡û
>W1710592214
FRCH01000001
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
67067
66992
-
Lys
CTT
[ENA]
¡û
>W1710603051
FUYT01000005
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
228708
228633
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK