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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330472 (91 seq.)
>W131168356
ARDZ01000004
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
653721
653646
-
Val
TAC
[ENA]
¡û
>W131168358
ARDZ01000004
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
653440
653365
-
Val
TAC
[ENA]
¡û
>C171092407
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
3467141
3467216
+
Val
TAC
-
¡û
>C171108449
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
3555545
3555470
-
Val
TAC
-
¡û
>C171108451
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
3555324
3555249
-
Val
TAC
-
¡û
>w021576
AAVT01000002
Gammaproteobacteria
marine gamma proteobacterium HTCC2143 [AAVT]
131205
131280
+
Val
TAC
[ENA]
¡û
>WENV180102730
OAOZ01007988
[OAOZ] marine metagenome; ENVO:00002010
616
691
+
Val
TAC
[ENA]
¢þ
>WENV180396850
OBPW01015297
[OBPW] marine metagenome; seawater
231
306
+
Val
TAC
[ENA]
¢þ
>W141235895
BAYU01000002
Gammaproteobacteria
Edwardsiella piscicida [BAYU]
136754
136679
-
Val
TAC
[ENA]
¡û
>WENV182591366
OJIM01002859
[OJIM] seawater metagenome; Sea water
381
456
+
Val
TAC
[ENA]
¢þ
>WENV182592786
OJIR01026822
[OJIR] seawater metagenome; Sea water
683
758
+
Val
TAC
[ENA]
¢þ
>C181000641
AP014856
Gammaproteobacteria
Escherichia albertii CB9786 [AP014856]
2412603
2412678
+
Val
TAC
-
¡û
>C181115941
CP025317
Gammaproteobacteria
Escherichia albertii 1551-2 [CP025317]
2474058
2474133
+
Val
TAC
-
¡û
>C181121111
CP025676
Gammaproteobacteria
Escherichia albertii ChinaSP140150 [CP025676]
1378058
1377983
-
Val
TAC
-
¡û
>C181192942
CP030787
Gammaproteobacteria
Escherichia albertii 2013C-4143 [CP030787]
3195884
3195959
+
Val
TAC
-
¡û
>C181203322
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
632403
632328
-
Val
TAC
-
¡û
>C181203324
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
632182
632107
-
Val
TAC
-
¡û
>C191120685
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
1049793
1049868
+
Val
TAC
-
¡û
>C191145250
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
359704
359779
+
Val
TAC
-
¡û
>C191145252
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
359925
360000
+
Val
TAC
-
¡û
>C191200513
LR134215
Gammaproteobacteria
Shimwellia blattae NCTC12127 [LR134215]
2730461
2730386
-
Val
TAC
-
¡û
>C191200515
LR134215
Gammaproteobacteria
Shimwellia blattae NCTC12127 [LR134215]
2730191
2730116
-
Val
TAC
-
¡û
>C191200528
LR134215
Gammaproteobacteria
Shimwellia blattae NCTC12127 [LR134215]
1144093
1144018
-
Val
TAC
-
¡û
>C191200530
LR134215
Gammaproteobacteria
Shimwellia blattae NCTC12127 [LR134215]
1143851
1143776
-
Val
TAC
-
¡û
>W1910038552
BEGZ01000480
Gammaproteobacteria
Escherichia albertii Hiroshima3582 [BEGZ]
179
104
-
Val
TAC
[ENA]
¡û
>W1910175880
BJCU01000001
Gammaproteobacteria
Escherichia albertii ZAI-5-1 [BJCU]
887275
887350
+
Val
TAC
[ENA]
¡û
>W1910176056
BJCW01000015
Gammaproteobacteria
Escherichia albertii U350-1 [BJCW]
14848
14923
+
Val
TAC
[ENA]
¡û
>W1910176229
BJCY01000021
Gammaproteobacteria
Escherichia albertii AZN-8-1 [BJCY]
68671
68746
+
Val
TAC
[ENA]
¡û
>W1910176411
BJDB01000004
Gammaproteobacteria
Escherichia albertii Gifu_53 [BJDB]
5561
5636
+
Val
TAC
[ENA]
¡û
>W1910176524
BJDC01000044
Gammaproteobacteria
Escherichia albertii Mkr3964 [BJDC]
38460
38535
+
Val
TAC
[ENA]
¡û
>W1910176578
BJDD01000005
Gammaproteobacteria
Escherichia albertii Mkr3965 [BJDD]
31908
31983
+
Val
TAC
[ENA]
¡û
>W1910270360
FQLF01000001
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
678496
678421
-
Val
TAC
[ENA]
¡û
>C141011634
CP007025
Gammaproteobacteria
Escherichia albertii KF1 [CP007025]
3779902
3779827
-
Val
TAC
[Ensembl]
¡û
>W1911070117
NMPN01000122
Gammaproteobacteria
Edwardsiella anguillarum 11113 [NMPN]
101941
102016
+
Val
TAC
[ENA]
¡û
>W1810015068
BGMJ01000055
Gammaproteobacteria
Edwardsiella piscicida JF1307 [BGMJ]
135
60
-
Val
TAC
[ENA]
¡û
>W1810056981
PDHK01000001
Gammaproteobacteria
Escherichia albertii 403_13 [PDHK]
57522
57447
-
Val
TAC
[ENA]
¡û
>W1810307136
PTRR01000002
Gammaproteobacteria
Escherichia albertii MOD1-EC1724 [PTRR]
370675
370750
+
Val
TAC
[ENA]
¡û
>W1810309929
PTTE01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC1733 [PTTE]
268950
269025
+
Val
TAC
[ENA]
¡û
>W1810533484
QCZP01000001
Gammaproteobacteria
Edwardsiella piscicida LADL97-168 [QCZP]
645413
645338
-
Val
TAC
[ENA]
¡û
>W1810533486
QCZP01000001
Gammaproteobacteria
Edwardsiella piscicida LADL97-168 [QCZP]
645192
645117
-
Val
TAC
[ENA]
¡û
>W1810533551
QCZQ01000001
Gammaproteobacteria
Edwardsiella piscicida LADL99-462 [QCZQ]
339692
339617
-
Val
TAC
[ENA]
¡û
>W1810533652
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
636162
636087
-
Val
TAC
[ENA]
¡û
>W1810533654
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
635941
635866
-
Val
TAC
[ENA]
¡û
>W1810533818
QCZT01000002
Gammaproteobacteria
Edwardsiella piscicida S07-275 [QCZT]
336827
336752
-
Val
TAC
[ENA]
¡û
>W1810533820
QCZT01000002
Gammaproteobacteria
Edwardsiella piscicida S07-275 [QCZT]
336606
336531
-
Val
TAC
[ENA]
¡û
>W1810533868
QCZU01000001
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
682164
682239
+
Val
TAC
[ENA]
¡û
>W1810533870
QCZU01000001
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
682385
682460
+
Val
TAC
[ENA]
¡û
>W1810533952
QCZV01000001
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
480066
480141
+
Val
TAC
[ENA]
¡û
>W1810533954
QCZV01000001
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
480287
480362
+
Val
TAC
[ENA]
¡û
>W1810534033
QCZW01000001
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
641170
641095
-
Val
TAC
[ENA]
¡û
>W1810534035
QCZW01000001
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
640949
640874
-
Val
TAC
[ENA]
¡û
>W1810534128
QCZX01000001
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
340807
340732
-
Val
TAC
[ENA]
¡û
>W1810534130
QCZX01000001
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
340586
340511
-
Val
TAC
[ENA]
¡û
>W1510079933
CDRK01000431
Gammaproteobacteria
Escherichia coli 80B_L1 [CDRK]
2923
2998
+
Val
TAC
[ENA]
¡û
>W1510079938
CDRK01000452
Gammaproteobacteria
Escherichia coli 80B_L1 [CDRK]
228
303
+
Val
TAC
[ENA]
¡û
>W1510732648
CYCK01000016
Gammaproteobacteria
Escherichia coli 102606_aEPEC [CYCK]
108341
108416
+
Val
TAC
[ENA]
¡û
>W1510756327
JABY01000006
Gammaproteobacteria
Edwardsiella anguillarum ET070829 [JABY]
263952
263877
-
Val
TAC
[ENA]
¡û
>W1510756338
JABY01000007
Gammaproteobacteria
Edwardsiella anguillarum ET070829 [JABY]
221
146
-
Val
TAC
[ENA]
¡û
>W1510756740
JACP01000004
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
166751
166676
-
Val
TAC
[ENA]
¡û
>W1510756742
JACP01000004
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
166530
166455
-
Val
TAC
[ENA]
¡û
>W1510756744
JACP01000004
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
166309
166234
-
Val
TAC
[ENA]
¡û
>W1511425529
JUBF01000026
Gammaproteobacteria
Edwardsiella sp. EA181011 [JUBF]
9795
9870
+
Val
TAC
[ENA]
¡û
>C121001579
CP001560
Gammaproteobacteria
Shimwellia blattae DSM 4481 = NBRC 105725 [CP001560]
2730662
2730587
-
Val
TAC
-
¡û
>C121001581
CP001560
Gammaproteobacteria
Shimwellia blattae DSM 4481 = NBRC 105725 [CP001560]
2730392
2730317
-
Val
TAC
-
¡û
>C121001594
CP001560
Gammaproteobacteria
Shimwellia blattae DSM 4481 = NBRC 105725 [CP001560]
1143002
1142927
-
Val
TAC
-
¡û
>C121001596
CP001560
Gammaproteobacteria
Shimwellia blattae DSM 4481 = NBRC 105725 [CP001560]
1142760
1142685
-
Val
TAC
-
¡û
>W1610054921
BBVF01000015
Gammaproteobacteria
Escherichia albertii [BBVF]
108291
108366
+
Val
TAC
[ENA]
¡û
>W1610054949
BBVG01000001
Gammaproteobacteria
Escherichia albertii [BBVG]
317992
318067
+
Val
TAC
[ENA]
¡û
>W1610055066
BBVI01000001
Gammaproteobacteria
Escherichia albertii [BBVI]
200706
200631
-
Val
TAC
[ENA]
¡û
>W1610055191
BBVK01000002
Gammaproteobacteria
Escherichia albertii [BBVK]
259622
259697
+
Val
TAC
[ENA]
¡û
>W1610055316
BBVM01000002
Gammaproteobacteria
Escherichia albertii [BBVM]
188796
188871
+
Val
TAC
[ENA]
¡û
>W1610055433
BBVO01000007
Gammaproteobacteria
Escherichia albertii [BBVO]
37096
37171
+
Val
TAC
[ENA]
¡û
>W1610055483
BBVP01000004
Gammaproteobacteria
Escherichia albertii [BBVP]
32386
32461
+
Val
TAC
[ENA]
¡û
>W1610055601
BBVQ01000089
Gammaproteobacteria
Escherichia albertii [BBVQ]
5501
5576
+
Val
TAC
[ENA]
¡û
>W1610055629
BBVR01000012
Gammaproteobacteria
Escherichia albertii [BBVR]
108232
108307
+
Val
TAC
[ENA]
¡û
>W1610055760
BBVT01000006
Gammaproteobacteria
Escherichia albertii [BBVT]
28158
28083
-
Val
TAC
[ENA]
¡û
>W1610055969
BBVX01000002
Gammaproteobacteria
Escherichia albertii [BBVX]
356839
356914
+
Val
TAC
[ENA]
¡û
>C131013179
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
1252822
1252747
-
Val
TAC
[Ensembl]
¡û
>WENV079070
AASZ01000046
Olavius algarvensis microbiome from Mediterranean sea
22113
22190
+
Val
TAC
[ENA]
>W1710002327
ADJH01000009
Gammaproteobacteria
Escherichia albertii B156 [ADJH]
2280949
2281024
+
Val
TAC
[ENA]
¡û
>W1710051620
BBVF01000015
Gammaproteobacteria
Escherichia albertii [BBVF]
108291
108366
+
Val
TAC
[ENA]
¡û
>W1710051648
BBVG01000001
Gammaproteobacteria
Escherichia albertii [BBVG]
317992
318067
+
Val
TAC
[ENA]
¡û
>W1710051765
BBVI01000001
Gammaproteobacteria
Escherichia albertii [BBVI]
200706
200631
-
Val
TAC
[ENA]
¡û
>W1710051890
BBVK01000002
Gammaproteobacteria
Escherichia albertii [BBVK]
259622
259697
+
Val
TAC
[ENA]
¡û
>W1710052015
BBVM01000002
Gammaproteobacteria
Escherichia albertii [BBVM]
188796
188871
+
Val
TAC
[ENA]
¡û
>W1710052132
BBVO01000007
Gammaproteobacteria
Escherichia albertii [BBVO]
37096
37171
+
Val
TAC
[ENA]
¡û
>W1710052182
BBVP01000004
Gammaproteobacteria
Escherichia albertii [BBVP]
32386
32461
+
Val
TAC
[ENA]
¡û
>W1710052300
BBVQ01000089
Gammaproteobacteria
Escherichia albertii [BBVQ]
5501
5576
+
Val
TAC
[ENA]
¡û
>W1710052328
BBVR01000012
Gammaproteobacteria
Escherichia albertii [BBVR]
108232
108307
+
Val
TAC
[ENA]
¡û
>W1710052459
BBVT01000006
Gammaproteobacteria
Escherichia albertii [BBVT]
28158
28083
-
Val
TAC
[ENA]
¡û
>W1710052668
BBVX01000002
Gammaproteobacteria
Escherichia albertii [BBVX]
356839
356914
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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