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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330614 (31 seq.)
>W1711361350
MDLC01000065
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
2081
2006
-
Lys
TTT
[ENA]
¡û
>C171118516
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
5053191
5053266
+
Lys
TTT
-
¡û
>C171118517
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
5053333
5053408
+
Lys
TTT
-
¡û
>W131215010
ATUQ01000007
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
89252
89177
-
Lys
TTT
[ENA]
¡û
>W131215011
ATUQ01000007
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
89122
89047
-
Lys
TTT
[ENA]
¡û
>WENV180104799
OAPC01114639
[OAPC] marine metagenome; na
254
329
+
Lys
TTT
[ENA]
¢þ
>WENV182540696
OJAP01000184
[OJAP] seawater metagenome; Sea water
7000
7075
+
Lys
TTT
[ENA]
¢þ
>WENV182542084
OJAV01002109
[OJAV] seawater metagenome; Sea water
2298
2373
+
Lys
TTT
[ENA]
¢þ
>WENV182544016
OJBE01000010
[OJBE] seawater metagenome; Sea water
141537
141612
+
Lys
TTT
[ENA]
¢þ
>WENV182544017
OJBE01000010
[OJBE] seawater metagenome; Sea water
141698
141773
+
Lys
TTT
[ENA]
¢þ
>WENV182545882
OJBO01000012
[OJBO] seawater metagenome; Sea water
78566
78491
-
Lys
TTT
[ENA]
¢þ
>WENV182549639
OJBY01004309
[OJBY] seawater metagenome; Sea water
1259
1334
+
Lys
TTT
[ENA]
¢þ
>WENV182549975
OJBZ01001079
[OJBZ] seawater metagenome; Sea water
3326
3401
+
Lys
TTT
[ENA]
¢þ
>WENV182562219
OJDZ01000118
[OJDZ] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV182562249
OJDZ01000254
[OJDZ] seawater metagenome; Sea water
34298
34373
+
Lys
TTT
[ENA]
¢þ
>WENV182566792
OJEM01005390
[OJEM] seawater metagenome; Sea water
1689
1614
-
Lys
TTT
[ENA]
¢þ
>WENV182566793
OJEM01005390
[OJEM] seawater metagenome; Sea water
1528
1453
-
Lys
TTT
[ENA]
¢þ
>WENV183055203
OLGX01000147
[OLGX] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV183055243
OLGX01000297
[OLGX] seawater metagenome; Sea water
21188
21263
+
Lys
TTT
[ENA]
¢þ
>WENV183057318
OLHL01000349
[OLHL] seawater metagenome; Sea water
23357
23432
+
Lys
TTT
[ENA]
¢þ
>WENV183057319
OLHL01000349
[OLHL] seawater metagenome; Sea water
23518
23593
+
Lys
TTT
[ENA]
¢þ
>WENV183059585
OLHV01000028
[OLHV] seawater metagenome; Sea water
216
141
-
Lys
TTT
[ENA]
¢þ
>WENV183059622
OLHV01000081
[OLHV] seawater metagenome; Sea water
52363
52288
-
Lys
TTT
[ENA]
¢þ
>WENV183623035
OOFX01003125
[OOFX] marine metagenome; sea ice
394
319
-
Lys
TTT
[ENA]
¢þ
>W1810305970
PTQZ01000306
Gammaproteobacteria
Amnimonas aquatica HR-E [PTQZ]
904
979
+
Lys
TTT
[ENA]
¡û
>C151017314
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2627260
2627335
+
Lys
TTT
[Ensembl]
¡û
>C151017315
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2627418
2627493
+
Lys
TTT
[Ensembl]
¡û
>WENV033921
AACY021565062
Marine microbial communities from Global Ocean Sampling (GOS)
591
666
+
Lys
TTT
[ENA]
>W1510865154
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4632176
4632101
-
Lys
TTT
[ENA]
¡û
>C131006069
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
4210960
4211035
+
Lys
TTT
[Ensembl]
¡û
>C131006070
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
4211090
4211165
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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