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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.330670 (66 seq.)
>W1710884183
LMWK01000017
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
10732
10659
-
His
GTG
[ENA]
¡û
>W1710884894
LMWV01000005
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
9966
9893
-
His
GTG
[ENA]
¡û
>W1711183394
LWLA01000005
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
210803
210728
-
His
GTG
[ENA]
¡û
>W1711627058
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4717777
4717702
-
His
GTG
[ENA]
¡û
>C171109518
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3735816
3735741
-
His
GTG
-
¡û
>WENV180018955
FTBE01000034
[FTBE] metagenome; soil
32975
32901
-
His
GTG
[ENA]
¢þ
>W141037519
ALNP01000025
Actinomycetota
Streptomyces sp. AA0539 [ALNP]
42254
42327
+
His
GTG
[ENA]
¡û
>W141282736
JAIY01000013
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
220066
219991
-
His
GTG
[ENA]
¡û
>W141282748
JAIZ01000049
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
12314
12239
-
His
GTG
[ENA]
¡û
>WENV183750388
PPFU01295337
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3120
3193
+
His
GTG
[ENA]
¢þ
>WENV170564233
CZKG01000024
[CZKG] soil metagenome genome assembly CiPEHR-AK-2010-FBin.8, contig:; soil
26544
26471
-
His
GTG
[ENA]
¢þ
>C181193539
CP030862
Actinomycetota
Streptomyces globosus LZH-48 [CP030862]
5919228
5919301
+
His
GTG
-
¡û
>C181193572
CP030862
Actinomycetota
Streptomyces globosus LZH-48 [CP030862]
2013065
2012992
-
His
GTG
-
¡û
>C191089621
CP032427
Actinomycetota
Streptomyces griseorubiginosus 3E-1 [CP032427]
5964262
5964189
-
His
GTG
-
¡û
>C191187347
CP041168
Actinomycetota
Streptomyces griseorubiginosus BTU6 [CP041168]
3477117
3477190
+
His
GTG
-
¡û
>W141726614
JNBY01000085
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
28824
28899
+
His
GTG
[ENA]
¡û
>W141755585
JNWQ01000085
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
17486
17561
+
His
GTG
[ENA]
¡û
>W141755645
JNWR01000044
Actinomycetota
Kitasatospora aureofaciens [JNWR]
27000
27075
+
His
GTG
[ENA]
¡û
>W141757027
JNXO01005345
Actinomycetota
Kitasatospora misakiensis [JNXO]
1232
1307
+
His
GTG
[ENA]
¡û
>W141759243
JNZE01001800
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JNZE]
2554
2481
-
His
GTG
[ENA]
¡û
>W141759699
JNZN01001869
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
6768
6693
-
His
GTG
[ENA]
¡û
>W141760897
JOAI01000051
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
92488
92413
-
His
GTG
[ENA]
¡û
>W141761797
JOAY01000051
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
26153
26228
+
His
GTG
[ENA]
¡û
>W141766012
JODS01000010
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
28092
28167
+
His
GTG
[ENA]
¡û
>W141769855
JOGB01000045
Actinomycetota
Streptomyces sp. NRRL S-87 [JOGB]
33397
33324
-
His
GTG
[ENA]
¡û
>W141769863
JOGB01000070
Actinomycetota
Streptomyces sp. NRRL S-87 [JOGB]
8333
8260
-
His
GTG
[ENA]
¡û
>W141770120
JOGG01000057
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
27184
27259
+
His
GTG
[ENA]
¡û
>W141770189
JOGH01000068
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
8128
8053
-
His
GTG
[ENA]
¡û
>W141770579
JOGP01000002
Actinomycetota
Streptomyces sp. NRRL B-3229 [JOGP]
10059
9986
-
His
GTG
[ENA]
¡û
>W141771641
JOHH01002316
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
1415
1340
-
His
GTG
[ENA]
¡û
>W141771922
JOHM01003591
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
203
128
-
His
GTG
[ENA]
¡û
>W141771983
JOHN01000065
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
35529
35454
-
His
GTG
[ENA]
¡û
>W141772035
JOHO01000016
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
27745
27820
+
His
GTG
[ENA]
¡û
>W141774392
JOJA01000092
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
26626
26701
+
His
GTG
[ENA]
¡û
>W141819989
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
3975615
3975540
-
His
GTG
[ENA]
¡û
>W1911083727
NNBO01000013
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
208492
208417
-
His
GTG
[ENA]
¡û
>W1911494831
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
4907485
4907410
-
His
GTG
[ENA]
¡û
>W1810072991
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
2710271
2710346
+
His
GTG
[ENA]
¡û
>W1810120985
PHUB01000001
Actinomycetota
Streptomyces sp. Ag109_G2-1 [PHUB]
1778703
1778776
+
His
GTG
[ENA]
¡û
>W1810121012
PHUB01000001
Actinomycetota
Streptomyces sp. Ag109_G2-1 [PHUB]
4835889
4835816
-
His
GTG
[ENA]
¡û
>W1810121534
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
5117781
5117706
-
His
GTG
[ENA]
¡û
>W1810173032
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
4766657
4766582
-
His
GTG
[ENA]
¡û
>W1810394687
PYBW01000028
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
16942
17017
+
His
GTG
[ENA]
¡û
>W1810579920
QEST01000184
Actinomycetota
Streptomyces sp. PT12 [QEST]
336284
336359
+
His
GTG
[ENA]
¡û
>W1810693985
QLLT01000007
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
260303
260228
-
His
GTG
[ENA]
¡û
>W1810907937
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4546480
4546555
+
His
GTG
[ENA]
¡û
>C11111733
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
3018063
3018138
+
His
GTG
[Ensembl]
¡û
>W1511311684
JPRF01000478
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
1213
1138
-
His
GTG
[ENA]
¡û
>W1511498926
JWZS01000762
Actinomycetota
Streptomyces sp. RSD-27 [JWZS]
1341
1268
-
His
GTG
[ENA]
¡û
>W1511498937
JWZS01001310
Actinomycetota
Streptomyces sp. RSD-27 [JWZS]
2695
2622
-
His
GTG
[ENA]
¡û
>W1511519268
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
1034432
1034507
+
His
GTG
[ENA]
¡û
>W1511545205
JZKG01000126
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
5415
5490
+
His
GTG
[ENA]
¡û
>W1511555481
JZWV01000077
Actinomycetota
Streptomyces katrae NRRL ISP-5550 [JZWV]
27707
27780
+
His
GTG
[ENA]
¡û
>W1511555517
JZWV01001087
Actinomycetota
Streptomyces katrae NRRL ISP-5550 [JZWV]
4761
4688
-
His
GTG
[ENA]
¡û
>W1511555646
JZWY01000314
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
1555
1480
-
His
GTG
[ENA]
¡û
>W1511590449
LBHA01000172
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
3886
3811
-
His
GTG
[ENA]
¡û
>W1511696826
LGDO01000522
Actinomycetota
Streptomyces sp. XY431 [LGDO]
5035
4960
-
His
GTG
[ENA]
¡û
>W1610165061
FAXE01000168
Actinomycetota
Streptomyces specialis [FAXE]
55684
55759
+
His
GTG
[ENA]
¡û
>W1610746109
LMWK01000017
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
10732
10659
-
His
GTG
[ENA]
¡û
>W1610746820
LMWV01000005
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
9966
9893
-
His
GTG
[ENA]
¡û
>W1710166677
FAXE01000168
Actinomycetota
Streptomyces specialis [FAXE]
55684
55759
+
His
GTG
[ENA]
¡û
>W1710557968
FOLM01000001
Actinomycetota
Streptomyces aidingensis [FOLM]
617627
617700
+
His
GTG
[ENA]
¡û
>W1710560301
FONG01000031
Actinomycetota
Actinacidiphila alni [FONG]
38669
38744
+
His
GTG
[ENA]
¡û
>W1710570154
FOUY01000021
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
52543
52616
+
His
GTG
[ENA]
¡û
>W1710765853
LIPD01000013
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
251107
251032
-
His
GTG
[ENA]
¡û
>W1710769537
LISX01000010
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
26502
26577
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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