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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.331772 (47 seq.)
>W131231796
AUIS01000039
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
152
227
+
Trp
CCA
[ENA]
¡û
>WENV011116
AACY020302769
Marine microbial communities from Global Ocean Sampling (GOS)
1918
1841
-
Trp
CCA
[ENA]
>WENV011364
AACY020309589
Marine microbial communities from Global Ocean Sampling (GOS)
5111
5034
-
Trp
CCA
[ENA]
>W131161332
AQXP01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
192
267
+
Trp
CCA
[ENA]
¡û
>W131173690
ARHW01000003
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
15151
15076
-
Trp
CCA
[ENA]
¡û
>W131175179
ARJB01000008
Gammaproteobacteria
Thioalkalivibrio sp. AKL9 [ARJB]
15156
15081
-
Trp
CCA
[ENA]
¡û
>W131179676
ARMP01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALJT [ARMP]
185
260
+
Trp
CCA
[ENA]
¡û
>W131214693
ATUK01000007
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
531
606
+
Trp
CCA
[ENA]
¡û
>W131220229
ATZE01000035
Gammaproteobacteria
Sedimenticola selenatireducens DSM 17993 [ATZE]
15883
15808
-
Trp
CCA
[ENA]
¡û
>W131217699
ATXB01000001
Gammaproteobacteria
Methylohalobius crimeensis 10Ki [ATXB]
636317
636392
+
Trp
CCA
[ENA]
¡û
>w014151
AAOF01000012
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
57223
57146
-
Trp
CCA
[ENA]
¡û
>WENV180108020
OAPH01032539
[OAPH] marine metagenome; seawater
334
409
+
Trp
CCA
[ENA]
¢þ
>WENV180111725
OAPN01155043
[OAPN] marine metagenome; 2011
98
173
+
Trp
CCA
[ENA]
¢þ
>WENV180295051
OBIZ01014731
[OBIZ] soil metagenome; soil
392
467
+
Trp
CCA
[ENA]
¢þ
>WENV180343142
OBLK01000015
[OBLK] soil metagenome; Clay
99018
99093
+
Trp
CCA
[ENA]
¢þ
>WENV180351236
OBLQ010035020
[OBLQ] soil metagenome; soil
613
688
+
Trp
CCA
[ENA]
¢þ
>WENV180367747
OBOF01002512
[OBOF] marine metagenome; ENVO:00002010
153
228
+
Trp
CCA
[ENA]
¢þ
>WENV180370732
OBOH01190180
[OBOH] marine metagenome; ENVO:00002010
143
218
+
Trp
CCA
[ENA]
¢þ
>WENV181295133
OFHI01000780
[OFHI] soil metagenome; Clay
34
109
+
Leu
CAA
[ENA]
¢þ
>WENV181312931
OFJD01010894
[OFJD] marine metagenome; seawater
80
155
+
Trp
CCA
[ENA]
¢þ
>WENV181407627
OGCG01056217
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
319
394
+
Trp
CCA
[ENA]
¢þ
>WENV170013991
AVFP01001289
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
3462
3387
-
Trp
CCA
[ENA]
¢þ
>WENV170247147
CEQQ01019032
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
78
153
+
Trp
CCA
[ENA]
¢þ
>WENV170487238
CEVO01038017
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
368
443
+
Trp
CCA
[ENA]
¢þ
>WENV170538342
CEWR01071835
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
397
322
-
Trp
CCA
[ENA]
¢þ
>WENV170682695
LFIK01000931
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
15623
15548
-
Trp
CCA
[ENA]
¢þ
>WENV170705145
LLEP01008917
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
92
167
+
Trp
CCA
[ENA]
¢þ
>WENV170770692
LXNI01000015
[LXNI] sponge metagenome; marine sponge reef
180696
180621
-
Trp
CCA
[ENA]
¢þ
>WENV170897965
MDTD01119058
[MDTD] marine metagenome; seawater
1759
1834
+
Trp
CCA
[ENA]
¢þ
>WENV170950744
MEHZ011515255
[MEHZ] marine metagenome; marine surface water
88
13
-
Leu
CAA
[ENA]
¢þ
>W09104188
AALK01000036
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
11948
12023
+
Trp
CCA
[ENA]
¡û
>W09125850
ACIU01000001
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
392702
392777
+
Trp
CCA
[ENA]
¡û
>C191000737
AP017928
Gammaproteobacteria
Methylocaldum marinum S8 [AP017928]
3634159
3634084
-
Trp
CCA
-
¡û
>W141815578
JQIW01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALJ1 [JQIW]
192
267
+
Trp
CCA
[ENA]
¡û
>C151000127
AP012273
Gammaproteobacteria
Thiolapillus brandeum Hiromi 1 [AP012273]
324396
324471
+
Trp
CCA
[Ensembl]
¡û
>C151001082
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
186166
186241
+
Trp
CCA
[Ensembl]
¡û
>C151082444
CP011412
Gammaproteobacteria
Sedimenticola thiotaurini SIP-G1 [CP011412]
3136444
3136519
+
Trp
CCA
[Ensembl]
¡û
>C10101223
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2697363
2697288
-
Trp
CCA
[Ensembl]
¡û
>W1511500044
JXAS01000008
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
2636
2711
+
Trp
CCA
[ENA]
¡û
>W1511510999
JXSO01000109
Gammaproteobacteria
Achromatium sp. WMS3 [JXSO]
1264
1339
+
Trp
CCA
[ENA]
¡û
>W1511678212
LFCU01000218
Gammaproteobacteria
Candidatus Achromatium palustre [LFCU]
4635
4710
+
Trp
CCA
[ENA]
¡û
>W11176183
AFWV01000031
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
446
521
+
Trp
CCA
[ENA]
¡û
>WENV056714
AACY023263275
Marine microbial communities from Global Ocean Sampling (GOS)
1264
1341
+
Trp
CCA
[ENA]
>W1610082158
BDEO01000010
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
2929
3004
+
Trp
CCA
[ENA]
¡û
>C131010950
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
2674832
2674757
-
Trp
CCA
[Ensembl]
¡û
>WENV079184
AASZ01002950
Olavius algarvensis microbiome from Mediterranean sea
2766
2689
-
Trp
CCA
[ENA]
>W1710080931
BDEO01000010
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
2929
3004
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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