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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.331860 (54 seq.)
>W1710852593
LLVV01000070
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
148266
148341
+
Trp
CCA
[ENA]
¡û
>W1710856848
LLZR01000008
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
55073
54998
-
Trp
CCA
[ENA]
¡û
>W1711421714
MHZR01000029
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
15945
15870
-
Trp
CCA
[ENA]
¡û
>W1711421778
MHZS01000208
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
19884
19809
-
Trp
CCA
[ENA]
¡û
>W1711603472
MOLY01000046
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
277838
277763
-
Trp
CCA
[ENA]
¡û
>C171074100
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
1056267
1056192
-
Trp
CCA
-
¡û
>W131216083
ATVN01000021
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
49367
49292
-
Trp
CCA
[ENA]
¡û
>WENV180028297
FTJA01058271
[FTJA] metagenome; soil
174
249
+
Trp
CCA
[ENA]
¢þ
>WENV180390948
OBPM01000060
[OBPM] marine metagenome; ENVO:00002010
21272
21197
-
Trp
CCA
[ENA]
¢þ
>WENV180391017
OBPM01001488
[OBPM] marine metagenome; ENVO:00002010
1604
1679
+
Trp
CCA
[ENA]
¢þ
>WENV181173074
OEIV011178660
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
171
96
-
Trp
CCA
[ENA]
¢þ
>WENV181226744
OFDN01000032
[OFDN] hot springs metagenome; Water
79119
79044
-
Trp
CCA
[ENA]
¢þ
>WENV181370468
OFQS01017650
[OFQS] freshwater metagenome; Freshwater Lake
176
251
+
Trp
CCA
[ENA]
¢þ
>WENV181384956
OFRI01022464
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1045
1120
+
Trp
CCA
[ENA]
¢þ
>WENV181400468
OFSF01007253
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1109
1184
+
Trp
CCA
[ENA]
¢þ
>W141191547
AYPR01000005
Alphaproteobacteria
Rhodobacter capsulatus DE442 [AYPR]
101018
101093
+
Trp
CCA
[ENA]
¡û
>W141191695
AYPY01000003
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
149416
149341
-
Trp
CCA
[ENA]
¡û
>W141191757
AYPZ01000027
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
101141
101216
+
Trp
CCA
[ENA]
¡û
>W141191812
AYQA01000038
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
101035
101110
+
Trp
CCA
[ENA]
¡û
>W141191840
AYQB01000006
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
101031
101106
+
Trp
CCA
[ENA]
¡û
>W141191886
AYQC01000005
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
101077
101152
+
Trp
CCA
[ENA]
¡û
>W141237314
BBJC01000004
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
315334
315259
-
Trp
CCA
[ENA]
¡û
>WENV170961824
MLJW01002014
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2091
2016
-
Trp
CCA
[ENA]
¢þ
>PL191001406
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
579751
579676
-
Trp
CCA
[ENA]
¡û
>C181081637
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
392035
392110
+
Trp
CCA
-
¡û
>C181169759
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
387329
387404
+
Trp
CCA
-
¡û
>W1910574853
JQHS01000004
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
980291
980216
-
Trp
CCA
[ENA]
¡û
>W1910744055
MHZU01000039
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
1167
1242
+
Trp
CCA
[ENA]
¡û
>W1911391070
NWBU01000011
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
23778
23853
+
Trp
CCA
[ENA]
¡û
>W1911491909
OAOQ01000002
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
115914
115989
+
Trp
CCA
[ENA]
¡û
>W1810445041
PZKG01000083
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
17035
16960
-
Trp
CCA
[ENA]
¡û
>W1810672414
QJTK01000003
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
40895
40970
+
Trp
CCA
[ENA]
¡û
>W1810676605
QKMD01000001
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
122638
122713
+
Trp
CCA
[ENA]
¡û
>W1810685827
QKZO01000009
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
148385
148460
+
Trp
CCA
[ENA]
¡û
>W1810686013
QKZS01000031
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
17733
17658
-
Trp
CCA
[ENA]
¡û
>W1810789421
QRGP01000002
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
243935
243860
-
Trp
CCA
[ENA]
¡û
>C10110600
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
322907
322982
+
Trp
CCA
[Ensembl]
¡û
>W11151056
AEWJ01000024
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
169106
169181
+
Trp
CCA
[ENA]
¡û
>W1511698373
LGHS01000061
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
60915
60840
-
Trp
CCA
[ENA]
¡û
>W1511698423
LGHT01000041
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
17948
17873
-
Trp
CCA
[ENA]
¡û
>W1511698452
LGHU01000067
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
22413
22338
-
Trp
CCA
[ENA]
¡û
>W1511698482
LGHV01000015
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
1538
1613
+
Trp
CCA
[ENA]
¡û
>C161043338
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
403614
403689
+
Trp
CCA
[Ensembl]
¡û
>W1610614684
LGIC01000084
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
23923
23848
-
Trp
CCA
[ENA]
¡û
>W1610626109
LIBR01000009
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
11035
10960
-
Trp
CCA
[ENA]
¡û
>W1610626696
LICP01000326
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
127
202
+
Trp
CCA
[ENA]
¡û
>W1610715732
LLVV01000070
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
148266
148341
+
Trp
CCA
[ENA]
¡û
>W1610719229
LLZR01000008
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
55073
54998
-
Trp
CCA
[ENA]
¡û
>W1710512382
FMZJ01000008
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
186959
187034
+
Trp
CCA
[ENA]
¡û
>W1710546407
FOCE01000022
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
1441
1516
+
Trp
CCA
[ENA]
¡û
>W1710593901
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1039640
1039565
-
Trp
CCA
[ENA]
¡û
>W1710735818
LGIC01000084
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
23923
23848
-
Trp
CCA
[ENA]
¡û
>W1710757236
LIBR01000009
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
11035
10960
-
Trp
CCA
[ENA]
¡û
>W1710757823
LICP01000326
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
127
202
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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