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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.332531 (80 seq.)
>W1710860500
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
589615
589690
+
Asn
GTT
[ENA]
¡û
>W1710872353
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
286194
286269
+
Asn
GTT
[ENA]
¡û
>W1710873144
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
631179
631254
+
Asn
GTT
[ENA]
¡û
>W1710873977
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
372276
372201
-
Asn
GTT
[ENA]
¡û
>W1710875758
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
318266
318191
-
Asn
GTT
[ENA]
¡û
>W1710881124
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
582552
582627
+
Asn
GTT
[ENA]
¡û
>W131162253
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
2122664
2122737
+
Asn
GTT
[ENA]
¡û
>W131184628
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
153921
153848
-
Asn
GTT
[ENA]
¡û
>W131221956
AUAX01000001
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
423013
422938
-
Asn
GTT
[ENA]
¡û
>W131242135
CAAH010000099
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
66729
66802
+
Asn
GTT
[ENA]
¡û
>W131242177
CAAO010000111
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
66729
66802
+
Asn
GTT
[ENA]
¡û
>W131249889
CAUD01000099
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250366
CAUP010000092
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
66733
66806
+
Asn
GTT
[ENA]
¡û
>W131250408
CAUQ010000081
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
66732
66805
+
Asn
GTT
[ENA]
¡û
>W131250450
CAUR010000084
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250617
CAUV010000102
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250659
CAUW010000094
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
66734
66807
+
Asn
GTT
[ENA]
¡û
>W131250701
CAUX010000081
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
66733
66806
+
Asn
GTT
[ENA]
¡û
>W131250826
CAVB010000093
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
66728
66801
+
Asn
GTT
[ENA]
¡û
>W1711505282
MKVJ01000013
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
81118
81043
-
Asn
GTT
[ENA]
¡û
>C026018
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
371436
371508
+
Asn
GTT
[Ensembl]
¡û
>WENV180016237
FSUF01001676
[FSUF] metagenome; soil
324
251
-
Asn
GTT
[ENA]
¢þ
>WENV180017269
FSWR01000042
[FSWR] metagenome; soil
152976
153049
+
Asn
GTT
[ENA]
¢þ
>WENV180023787
FTIF01000373
[FTIF] metagenome; soil
15579
15652
+
Asn
GTT
[ENA]
¢þ
>WENV180026273
FTIT01000589
[FTIT] metagenome; soil
5732
5805
+
Asn
GTT
[ENA]
¢þ
>WENV180033458
FTKK01000369
[FTKK] metagenome; soil
2430
2503
+
Asn
GTT
[ENA]
¢þ
>WENV181226883
OFDN01000271
[OFDN] hot springs metagenome; Water
45173
45098
-
Asn
GTT
[ENA]
¢þ
>WENV181836139
OGVJ01001116
[OGVJ] freshwater metagenome; freshwater
2684
2611
-
Asn
GTT
[ENA]
¢þ
>WENV181841989
OGVS01020940
[OGVS] freshwater metagenome; freshwater
526
599
+
Asn
GTT
[ENA]
¢þ
>WENV181845514
OGVX01003408
[OGVX] freshwater metagenome; freshwater
2079
2006
-
Asn
GTT
[ENA]
¢þ
>WENV181846247
OGVX01030530
[OGVX] freshwater metagenome; freshwater
284
211
-
Asn
GTT
[ENA]
¢þ
>WENV181846618
OGVX01062784
[OGVX] freshwater metagenome; freshwater
329
402
+
Asn
GTT
[ENA]
¢þ
>WENV181847523
OGVY01033946
[OGVY] freshwater metagenome; freshwater
129
202
+
Asn
GTT
[ENA]
¢þ
>WENV181847887
OGVZ01000592
[OGVZ] freshwater metagenome; freshwater
4464
4391
-
Asn
GTT
[ENA]
¢þ
>WENV181848266
OGVZ01004046
[OGVZ] freshwater metagenome; freshwater
2350
2423
+
Asn
GTT
[ENA]
¢þ
>WENV181848543
OGVZ01010646
[OGVZ] freshwater metagenome; freshwater
1246
1173
-
Asn
GTT
[ENA]
¢þ
>WENV181849206
OGVZ01065508
[OGVZ] freshwater metagenome; freshwater
127
200
+
Asn
GTT
[ENA]
¢þ
>WENV181851447
OGWE01036742
[OGWE] freshwater metagenome; freshwater
57
132
+
Asn
GTT
[ENA]
¢þ
>WENV181853342
OGWI01002370
[OGWI] freshwater metagenome; freshwater
426
499
+
Asn
GTT
[ENA]
¢þ
>WENV181854864
OGWK01029753
[OGWK] freshwater metagenome; freshwater
46
119
+
Asn
GTT
[ENA]
¢þ
>WENV181855450
OGWL01019557
[OGWL] freshwater metagenome; freshwater
234
307
+
Asn
GTT
[ENA]
¢þ
>WENV181855681
OGWM01000336
[OGWM] freshwater metagenome; freshwater
4280
4353
+
Asn
GTT
[ENA]
¢þ
>WENV181855984
OGWM01009495
[OGWM] freshwater metagenome; freshwater
535
462
-
Asn
GTT
[ENA]
¢þ
>W141188397
AYMR01000007
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
431215
431140
-
Asn
GTT
[ENA]
¡û
>W141223292
BADC01001062
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
9490
9415
-
Asn
GTT
[ENA]
¡û
>WENV182865740
OKRQ01001111
[OKRQ] freshwater metagenome; freshwater
1884
1811
-
Asn
GTT
[ENA]
¢þ
>C181018766
CP015606
Actinomycetota
Actinobacteria bacterium IMCC26077 [CP015606]
1384851
1384778
-
Asn
GTT
-
¡û
>C191011710
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1697419
1697492
+
Asn
GTT
-
¡û
>WENV025110
AACY020861873
Marine microbial communities from Global Ocean Sampling (GOS)
401
326
-
Asn
GTT
[ENA]
>C141007912
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
1323613
1323540
-
Asn
GTT
[Ensembl]
¡û
>W1910857504
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2147481
2147554
+
Asn
GTT
[ENA]
¡û
>W1911685542
QKTM01000001
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
284492
284565
+
Asn
GTT
[ENA]
¡û
>W1911685593
QKTN01000002
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
259709
259782
+
Asn
GTT
[ENA]
¡û
>W1911685720
QKTQ01000001
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
261110
261183
+
Asn
GTT
[ENA]
¡û
>W1911685883
QKTT01000010
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
40015
40088
+
Asn
GTT
[ENA]
¡û
>W1911685906
QKTU01000001
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
296892
296819
-
Asn
GTT
[ENA]
¡û
>W1911686063
QKVS01000001
Actinomycetota
Curtobacterium sp. MCBD17_031 [QKVS]
259706
259779
+
Asn
GTT
[ENA]
¡û
>W1810089928
PGFB01000002
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
236885
236812
-
Asn
GTT
[ENA]
¡û
>C161073129
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
2938726
2938799
+
Asn
GTT
[Ensembl]
¡û
>C161076877
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
545605
545532
-
Asn
GTT
[Ensembl]
¡û
>WENV005871
AACY020164367
Marine microbial communities from Global Ocean Sampling (GOS)
948
873
-
Asn
GTT
[ENA]
>WENV061384
AACY023430609
Marine microbial communities from Global Ocean Sampling (GOS)
1356
1431
+
Asn
GTT
[ENA]
>WENV061394
AACY023430982
Marine microbial communities from Global Ocean Sampling (GOS)
1275
1200
-
Asn
GTT
[ENA]
>WENV006084
AACY020168023
Marine microbial communities from Global Ocean Sampling (GOS)
619
696
+
Asn
GTT
[ENA]
>WENV061753
AACY023439297
Marine microbial communities from Global Ocean Sampling (GOS)
306
381
+
Asn
GTT
[ENA]
>WENV062094
AACY023447590
Marine microbial communities from Global Ocean Sampling (GOS)
150
73
-
Asn
GTT
[ENA]
>WENV006171
AACY020169488
Marine microbial communities from Global Ocean Sampling (GOS)
3056
3131
+
Asn
GTT
[ENA]
>WENV006745
AACY020179323
Marine microbial communities from Global Ocean Sampling (GOS)
881
956
+
Asn
GTT
[ENA]
>W1610069871
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
112219
112144
-
Asn
GTT
[ENA]
¡û
>WENV006854
AACY020180602
Marine microbial communities from Global Ocean Sampling (GOS)
3118
3193
+
Asn
GTT
[ENA]
>W1610722846
LMCX01000002
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
589615
589690
+
Asn
GTT
[ENA]
¡û
>W1610734699
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
286194
286269
+
Asn
GTT
[ENA]
¡û
>W1610735490
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
631179
631254
+
Asn
GTT
[ENA]
¡û
>W1610736323
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
372276
372201
-
Asn
GTT
[ENA]
¡û
>W1610738104
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
318266
318191
-
Asn
GTT
[ENA]
¡û
>W1610743470
LMSV01000002
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
582552
582627
+
Asn
GTT
[ENA]
¡û
>WENV076509
AACY024100275
Marine microbial communities from Global Ocean Sampling (GOS)
916
841
-
Asn
GTT
[ENA]
>W1710067244
BCSV01000004
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
112219
112144
-
Asn
GTT
[ENA]
¡û
>W1710568267
FOTM01000005
Actinomycetota
Leifsonia sp. CL147 [FOTM]
105297
105224
-
Asn
GTT
[ENA]
¡û
>W1710602490
FUYG01000002
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
258382
258307
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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