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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334730 (54 seq.)
>WENV183706476
PDWI01004389
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV183706478
PDWI01004394
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
24
97
+
Lys
TTT
[ENA]
¢þ
>WENV183707190
PDWI01007222
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13596
13523
-
Lys
TTT
[ENA]
¢þ
>WENV183707191
PDWI01007222
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13483
13410
-
Lys
TTT
[ENA]
¢þ
>WENV183708332
PDWI01014874
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
199
126
-
Lys
TTT
[ENA]
¢þ
>WENV183708333
PDWI01014874
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
86
13
-
Lys
TTT
[ENA]
¢þ
>WENV183710204
PDWI01041606
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1224
1297
+
Lys
TTT
[ENA]
¢þ
>WENV183710205
PDWI01041606
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1431
1504
+
Lys
TTT
[ENA]
¢þ
>WENV183712804
PDWI01114438
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2252
2179
-
Lys
TTT
[ENA]
¢þ
>WENV183713806
PDWI01153959
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
86
13
-
Lys
TTT
[ENA]
¢þ
>WENV183714405
PDWI01182092
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
170
97
-
Lys
TTT
[ENA]
¢þ
>WENV183721072
PDWJ01054342
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
40
113
+
Lys
TTT
[ENA]
¢þ
>C181004380
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4597312
4597239
-
Lys
TTT
-
¡û
>C181004381
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4597205
4597132
-
Lys
TTT
-
¡û
>C181004382
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4597099
4597026
-
Lys
TTT
-
¡û
>C181004383
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4596992
4596919
-
Lys
TTT
-
¡û
>C181004384
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4596886
4596813
-
Lys
TTT
-
¡û
>C181004385
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
4596780
4596707
-
Lys
TTT
-
¡û
>W1910812447
MVDD01000010
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
114019
113946
-
Lys
TTT
[ENA]
¡û
>W1910812448
MVDD01000010
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
113913
113840
-
Lys
TTT
[ENA]
¡û
>W1910812449
MVDD01000010
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
113807
113734
-
Lys
TTT
[ENA]
¡û
>W1910812503
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
443
516
+
Lys
TTT
[ENA]
¡û
>W1910812504
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
551
624
+
Lys
TTT
[ENA]
¡û
>W1910812505
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
660
733
+
Lys
TTT
[ENA]
¡û
>W1910812506
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
768
841
+
Lys
TTT
[ENA]
¡û
>W1910812507
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
877
950
+
Lys
TTT
[ENA]
¡û
>W1910812508
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
985
1058
+
Lys
TTT
[ENA]
¡û
>W1910812509
MVDE01000024
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
32031
32104
+
Lys
TTT
[ENA]
¡û
>W1911718287
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73402
73475
+
Lys
TTT
[ENA]
¡û
>W1911718288
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73514
73587
+
Lys
TTT
[ENA]
¡û
>W1911718289
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73627
73700
+
Lys
TTT
[ENA]
¡û
>W1911718290
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73739
73812
+
Lys
TTT
[ENA]
¡û
>W1911718291
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73851
73924
+
Lys
TTT
[ENA]
¡û
>W1911718292
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
73963
74036
+
Lys
TTT
[ENA]
¡û
>W1911718293
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
74075
74148
+
Lys
TTT
[ENA]
¡û
>W1911718294
QQWG01000006
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
74187
74260
+
Lys
TTT
[ENA]
¡û
>W1911737975
QTZN01000016
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
105698
105771
+
Lys
TTT
[ENA]
¡û
>W1911737979
QTZN01000019
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
54
127
+
Lys
TTT
[ENA]
¡û
>W1911737980
QTZN01000019
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
30532
30605
+
Lys
TTT
[ENA]
¡û
>W1911737983
QTZN01000038
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
2
75
+
Lys
TTT
[ENA]
¡û
>W1911737984
QTZN01000038
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
108
181
+
Lys
TTT
[ENA]
¡û
>W1911737985
QTZN01000038
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
214
287
+
Lys
TTT
[ENA]
¡û
>W1810587825
QFLI01000002
Bacteroidota
Marinifilum breve JC075 [QFLI]
789586
789659
+
Lys
TTT
[ENA]
¡û
>W1810587826
QFLI01000002
Bacteroidota
Marinifilum breve JC075 [QFLI]
789696
789769
+
Lys
TTT
[ENA]
¡û
>W1810587827
QFLI01000002
Bacteroidota
Marinifilum breve JC075 [QFLI]
789809
789882
+
Lys
TTT
[ENA]
¡û
>W1810587828
QFLI01000002
Bacteroidota
Marinifilum breve JC075 [QFLI]
789919
789992
+
Lys
TTT
[ENA]
¡û
>W1810587857
QFLI01000007
Bacteroidota
Marinifilum breve JC075 [QFLI]
74
147
+
Lys
TTT
[ENA]
¡û
>W1810587858
QFLI01000007
Bacteroidota
Marinifilum breve JC075 [QFLI]
186
259
+
Lys
TTT
[ENA]
¡û
>W1810587859
QFLI01000007
Bacteroidota
Marinifilum breve JC075 [QFLI]
12900
12973
+
Lys
TTT
[ENA]
¡û
>W1810587892
QFLI01000151
Bacteroidota
Marinifilum breve JC075 [QFLI]
359
286
-
Lys
TTT
[ENA]
¡û
>W1810587893
QFLI01000151
Bacteroidota
Marinifilum breve JC075 [QFLI]
249
176
-
Lys
TTT
[ENA]
¡û
>W1810587894
QFLI01000151
Bacteroidota
Marinifilum breve JC075 [QFLI]
137
64
-
Lys
TTT
[ENA]
¡û
>W1610043627
BAZX01000035
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
25477
25404
-
Lys
TTT
[ENA]
¡û
>W1710040787
BAZX01000035
Bacteroidota
Marinifilum fragile JCM 15579 [BAZX]
25477
25404
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK