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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334730 (19 seq.)
>W1710893471
LNEU01000022
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
216246
216171
-
Thr
CGT
[ENA]
¡û
>C171130519
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2156210
2156135
-
Thr
CGT
-
¡û
>C010352
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
208366
208441
+
Thr
CGT
[Ensembl]
¡û
>C011106
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
265261
265336
+
Thr
CGT
[Ensembl]
¡û
>WENV180018282
FSYV01000198
[FSYV] metagenome; soil
69295
69220
-
Thr
CGT
[ENA]
¡û
>WENV180032706
FTKD01000020
[FTKD] metagenome; soil
108054
107979
-
Thr
CGT
[ENA]
¡û
>WENV181315163
OFJN01002753
[OFJN] marine metagenome; sea ice
365
440
+
Thr
CGT
[ENA]
¡û
>WENV183614734
OODW01054604
[OODW] marine metagenome; sea ice
258
333
+
Thr
CGT
[ENA]
¡û
>WENV170709546
LNFM01000449
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
277
352
+
Thr
CGT
[ENA]
¡û
>C191004585
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
2669270
2669195
-
Thr
CGT
-
¡û
>W141817325
JQKP01000002
Betaproteobacteria
Ferriphaselus sp. R-1 [JQKP]
61490
61415
-
Thr
CGT
[ENA]
¡û
>W1810297234
PTLZ01000004
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
228
303
+
Thr
CGT
[ENA]
¡û
>W2011647618
SNWF01000006
Betaproteobacteria
Herminiimonas fonticola DSM 18555 [SNWF]
196
271
+
Thr
CGT
[ENA]
¡û
>W2110097088
CAJEVT010000004
Betaproteobacteria
Herminiimonas sp. Marseille-P9896 [CAJEVT]
498
573
+
Thr
CGT
[ENA]
¡û
>W2110119074
CAJPDU010000002
Betaproteobacteria
Rhodocyclaceae bacterium [CAJPDU]
2005
2080
+
Thr
CGT
[ENA]
¡û
>W2110360998
JADOEL010000047
Betaproteobacteria
Herminiimonas contaminans Marseille-Q4544 [JADOEL]
1134
1059
-
Thr
CGT
[ENA]
¡û
>W1510017314
BBTH01000006
Betaproteobacteria
Ferriphaselus amnicola OYT1 [BBTH]
133241
133316
+
Thr
CGT
[ENA]
¡û
>C241312792
CP133777
Betaproteobacteria
Actimicrobium sp. CCC2.4 [CP133777]
1260209
1260284
+
Thr
CGT
-
¡û
>W1610753737
LNEU01000022
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
216246
216171
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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