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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334757 (87 seq.)
>C171071106
CP017996
Bacillota
Companilactobacillus crustorum MN047 [CP017996]
621495
621569
+
Lys
TTT
-
¡û
>WENV180152440
OAUQ01003225
[OAUQ] human gut metagenome; faeces
195
121
-
Lys
TTT
[ENA]
¢þ
>WENV180196024
OAZZ01016096
[OAZZ] human gut metagenome; faeces
58
132
+
Lys
TTT
[ENA]
¢þ
>WENV180334757
OBLF01047735
[OBLF] metagenome; feces
649
575
-
Lys
TTT
[ENA]
¢þ
>WENV180576453
OCLZ01007993
[OCLZ] human gut metagenome; human gut
1195
1120
-
Lys
TTT
[ENA]
¢þ
>WENV181472609
OGEZ01004012
[OGEZ] metagenome; Human gut stool
3416
3341
-
Lys
TTT
[ENA]
¢þ
>W141228980
BAMH01000161
Bacillota
Companilactobacillus paralimentarius DSM 13238 = JCM 10415 [BAMH]
261
335
+
Lys
TTT
[ENA]
¡û
>WENV183309639
OLVC01001419
[OLVC] human gut metagenome; faeces
56
131
+
Lys
TTT
[ENA]
¢þ
>WENV183606615
OODN01022443
[OODN] human gut metagenome; human gut
58
133
+
Lys
TTT
[ENA]
¢þ
>WENV183606653
OODN01028261
[OODN] human gut metagenome; human gut
70
144
+
Lys
TTT
[ENA]
¢þ
>C181027336
CP017702
Bacillota
Companilactobacillus farciminis KCTC 3681 = DSM 20184 [CP017702]
1897231
1897157
-
Lys
TTT
-
¡û
>C181033623
CP018867
Bacillota
Companilactobacillus alimentarius DSM 20249 [CP018867]
57002
57076
+
Lys
TTT
-
¡û
>C181146863
CP027190
Bacillota
Lactobacillus sp. CBA3605 [CP027190]
480972
480898
-
Lys
TTT
-
¡û
>C181146922
CP027194
Bacillota
Lactobacillus sp. CBA3606 [CP027194]
751644
751570
-
Lys
TTT
-
¡û
>C181146924
CP027194
Bacillota
Lactobacillus sp. CBA3606 [CP027194]
751325
751251
-
Lys
TTT
-
¡û
>C181203577
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
1232785
1232711
-
Lys
TTT
-
¡û
>C191082983
CP031933
Bacillota
Companilactobacillus zhachilii HBUAS52074 [CP031933]
1990355
1990281
-
Lys
TTT
-
¡û
>W1910176745
BJDF01000022
Bacillota
Companilactobacillus huachuanensis 395-6.2 [BJDF]
324
398
+
Lys
TTT
[ENA]
¡û
>W1910176937
BJDJ01000020
Bacillota
Lactiplantibacillus daowaiensis 203-3 [BJDJ]
79
151
+
Lys
TTT
[ENA]
¡û
>W1910177514
BJDU01000005
Bacillota
Companilactobacillus formosensis NBRC 109509 [BJDU]
238224
238150
-
Lys
TTT
[ENA]
¡û
>W1910841774
NAES01000002
Bacillota
Loigolactobacillus backii VTT E-123217 [NAES]
1272463
1272537
+
Lys
TTT
[ENA]
¡û
>W1910841828
NAET01000008
Bacillota
Loigolactobacillus backii L101 [NAET]
157012
156938
-
Lys
TTT
[ENA]
¡û
>W1911747283
QWDH01000003
Bacillota
Companilactobacillus musae 313 [QWDH]
231737
231663
-
Lys
TTT
[ENA]
¡û
>W1810595147
QGDR01000002
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
93188
93114
-
Lys
TTT
[ENA]
¡û
>W1810595198
QGDR01000006
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
425646
425720
+
Lys
TTT
[ENA]
¡û
>W1810595211
QGDR01000009
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
1244
1319
+
Lys
TTT
[ENA]
¡û
>C151089923
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
873817
873743
-
Lys
TTT
[Ensembl]
¡û
>W1511352360
JROC01000029
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
478
552
+
Lys
TTT
[ENA]
¡û
>W1511352378
JROC01000032
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
112947
112871
-
Lys
TTT
[ENA]
¡û
>W1511352390
JROC01000033
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1384
1310
-
Lys
TTT
[ENA]
¡û
>W1511388681
JSWI01000006
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
56827
56751
-
Lys
TTT
[ENA]
¡û
>W1511388726
JSWI01000035
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
2191
2117
-
Lys
TTT
[ENA]
¡û
>W11142137
AEOT01000026
Bacillota
Companilactobacillus farciminis KCTC 3681 [AEOT]
128870
128796
-
Lys
TTT
[ENA]
¡û
>W1511580710
LARO01000071
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
2043
2117
+
Lys
TTT
[ENA]
¡û
>W1511580723
LARO01000089
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
1622
1548
-
Lys
TTT
[ENA]
¡û
>W11185001
BACR01000050
Bacillota
Companilactobacillus versmoldensis KCTC 3814 [BACR]
91
163
+
Lys
TTT
[ENA]
¡û
>C161038152
CP011952
Bacillota
Companilactobacillus farciminis CNCM-I-3699-S [CP011952]
163022
162948
-
Lys
TTT
-
¡û
>C161079001
CP014873
Bacillota
Loigolactobacillus backii TMW 1.1989 [CP014873]
1413825
1413899
+
Lys
TTT
[Ensembl]
¡û
>C161079015
CP014873
Bacillota
Loigolactobacillus backii TMW 1.1989 [CP014873]
1752452
1752526
+
Lys
TTT
[Ensembl]
¡û
>C161079068
CP014881
Bacillota
Loigolactobacillus backii TMW 1.1991 [CP014881]
627113
627187
+
Lys
TTT
-
¡û
>C161079101
CP014881
Bacillota
Loigolactobacillus backii TMW 1.1991 [CP014881]
1584313
1584239
-
Lys
TTT
-
¡û
>C161079147
CP014890
Bacillota
Loigolactobacillus backii TMW 1.1992 [CP014890]
1667564
1667490
-
Lys
TTT
-
¡û
>C161079161
CP014890
Bacillota
Loigolactobacillus backii TMW 1.1992 [CP014890]
1353378
1353304
-
Lys
TTT
-
¡û
>C161079208
CP014899
Bacillota
Loigolactobacillus backii TMW 1.2002 [CP014899]
2342682
2342608
-
Lys
TTT
-
¡û
>C161079222
CP014899
Bacillota
Loigolactobacillus backii TMW 1.2002 [CP014899]
2007447
2007373
-
Lys
TTT
-
¡û
>W121033311
AHIT01000012
Bacillota
Limosilactobacillus mucosae LM1 [AHIT]
95531
95605
+
Lys
TTT
[ENA]
¡û
>W1610032115
AYZI01000008
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [AYZI]
272
198
-
Lys
TTT
[ENA]
¡û
>W1610033880
AZDH01000026
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [AZDH]
144
218
+
Lys
TTT
[ENA]
¡û
>W1610034217
AZDO01000144
Bacillota
Companilactobacillus futsaii JCM 17355 [AZDO]
272
346
+
Lys
TTT
[ENA]
¡û
>W1610034319
AZDQ01000046
Bacillota
Companilactobacillus alimentarius DSM 20249 [AZDQ]
308
382
+
Lys
TTT
[ENA]
¡û
>W1610034344
AZDR01000002
Bacillota
Companilactobacillus farciminis KCTC 3681 = DSM 20184 [AZDR]
127068
126994
-
Lys
TTT
[ENA]
¡û
>W1610035025
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
680046
679970
-
Lys
TTT
[ENA]
¡û
>W1610036059
AZEZ01000102
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
144
218
+
Lys
TTT
[ENA]
¡û
>W1610036306
AZFE01000032
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
313
387
+
Lys
TTT
[ENA]
¡û
>W1610036613
AZFK01000074
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
4723
4649
-
Lys
TTT
[ENA]
¡û
>W1610037162
AZFV01000061
Bacillota
Companilactobacillus nantensis DSM 16982 [AZFV]
3601
3527
-
Lys
TTT
[ENA]
¡û
>W1610044157
BBAI01000006
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
1
75
+
Lys
TTT
[ENA]
¡û
>W1610044262
BBAK01000006
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [BBAK]
79
153
+
Lys
TTT
[ENA]
¡û
>W1610046741
BBCR01000004
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [BBCR]
124241
124315
+
Lys
TTT
[ENA]
¡û
>W1610046749
BBCR01000006
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [BBCR]
87747
87673
-
Lys
TTT
[ENA]
¡û
>W1610049102
BBER01000010
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
1
75
+
Lys
TTT
[ENA]
¡û
>W1610049959
BBFK01000002
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
265456
265382
-
Lys
TTT
[ENA]
¡û
>W1610060785
BCLJ01000021
Bacillota
Companilactobacillus farciminis [BCLJ]
43935
43861
-
Lys
TTT
[ENA]
¡û
>W1610073182
BCVS01000142
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
4728
4654
-
Lys
TTT
[ENA]
¡û
>W1610529763
JQCI01000025
Bacillota
Levilactobacillus parabrevis [JQCI]
1
73
+
Lys
TTT
[ENA]
¡û
>W1610530157
JQCQ01000023
Bacillota
Pediococcus argentinicus [JQCQ]
15673
15600
-
Lys
TTT
[ENA]
¡û
>W1710029042
AYZI01000008
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [AYZI]
272
198
-
Lys
TTT
[ENA]
¡û
>W1710031007
AZDH01000026
Bacillota
Companilactobacillus kimchii DSM 13961 = JCM 10707 [AZDH]
144
218
+
Lys
TTT
[ENA]
¡û
>W1710031344
AZDO01000144
Bacillota
Companilactobacillus futsaii JCM 17355 [AZDO]
272
346
+
Lys
TTT
[ENA]
¡û
>W1710031446
AZDQ01000046
Bacillota
Companilactobacillus alimentarius DSM 20249 [AZDQ]
308
382
+
Lys
TTT
[ENA]
¡û
>W1710031471
AZDR01000002
Bacillota
Companilactobacillus farciminis KCTC 3681 = DSM 20184 [AZDR]
127068
126994
-
Lys
TTT
[ENA]
¡û
>W1710032152
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
680046
679970
-
Lys
TTT
[ENA]
¡û
>W1710033098
AZEZ01000102
Bacillota
Companilactobacillus mindensis DSM 14500 [AZEZ]
144
218
+
Lys
TTT
[ENA]
¡û
>W1710033345
AZFE01000032
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [AZFE]
313
387
+
Lys
TTT
[ENA]
¡û
>W1710033652
AZFK01000074
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
4723
4649
-
Lys
TTT
[ENA]
¡û
>W1710034201
AZFV01000061
Bacillota
Companilactobacillus nantensis DSM 16982 [AZFV]
3601
3527
-
Lys
TTT
[ENA]
¡û
>W1710041317
BBAI01000006
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BBAI]
1
75
+
Lys
TTT
[ENA]
¡û
>W1710041422
BBAK01000006
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [BBAK]
79
153
+
Lys
TTT
[ENA]
¡û
>W1710043484
BBCR01000004
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [BBCR]
124241
124315
+
Lys
TTT
[ENA]
¡û
>W1710043492
BBCR01000006
Bacillota
Lentilactobacillus senioris DSM 24302 = JCM 17472 [BBCR]
87747
87673
-
Lys
TTT
[ENA]
¡û
>W1710045574
BBER01000010
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
1
75
+
Lys
TTT
[ENA]
¡û
>W1710046358
BBFK01000002
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
265456
265382
-
Lys
TTT
[ENA]
¡û
>W1710058081
BCLJ01000021
Bacillota
Companilactobacillus farciminis [BCLJ]
43935
43861
-
Lys
TTT
[ENA]
¡û
>W1710070300
BCVS01000142
Bacillota
Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 [BCVS]
4728
4654
-
Lys
TTT
[ENA]
¡û
>W1710631353
JQCI01000025
Bacillota
Levilactobacillus parabrevis [JQCI]
1
73
+
Lys
TTT
[ENA]
¡û
>W1710631747
JQCQ01000023
Bacillota
Pediococcus argentinicus [JQCQ]
15673
15600
-
Lys
TTT
[ENA]
¡û
>W1710735956
LGIZ01000019
Bacillota
Loigolactobacillus backii [LGIZ]
3811
3885
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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