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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334836 (33 seq.)
>W1710927016
LOEX01000052
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
18255
18180
-
Glu
TTC
[ENA]
¡û
>W131215039
ATUR01000002
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
31619
31544
-
Glu
TTC
[ENA]
¡û
>WENV181172649
OEIV010884971
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
220
145
-
Glu
TTC
[ENA]
¢þ
>WENV181172650
OEIV010884971
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
81
6
-
Glu
CTC
[ENA]
¢þ
>WENV183729134
PJTQ01006197
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1671
1596
-
Glu
TTC
[ENA]
¢þ
>WENV170576216
FRDC01000151
[FRDC] freshwater metagenome; water
89707
89782
+
Glu
TTC
[ENA]
¢þ
>W1910549122
FZPA01000012
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
117995
118070
+
Glu
CTC
[ENA]
¡û
>W1910651503
LYMM01000029
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
218338
218413
+
Glu
CTC
[ENA]
¡û
>C151048370
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3976889
3976814
-
Glu
TTC
[Ensembl]
¡û
>C151048397
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
104708
104633
-
Glu
TTC
[Ensembl]
¡û
>C151048398
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
104594
104519
-
Glu
CTC
[Ensembl]
¡û
>C151051512
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
3591941
3592016
+
Glu
TTC
-
¡û
>C151051514
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
3638296
3638371
+
Glu
CTC
-
¡û
>C151096927
CP012669
Alphaproteobacteria
Altererythrobacter epoxidivorans CGMCC 1.7731 [CP012669]
981280
981205
-
Glu
TTC
-
¡û
>W1510012859
BBNP01000062
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
75253
75328
+
Glu
TTC
[ENA]
¡û
>W1510012860
BBNP01000062
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
75368
75443
+
Glu
CTC
[ENA]
¡û
>W1510012861
BBNP01000062
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
75476
75551
+
Glu
TTC
[ENA]
¡û
>C11116191
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2575859
2575784
-
Glu
TTC
[Ensembl]
¡û
>C11116192
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2575745
2575670
-
Glu
CTC
[Ensembl]
¡û
>C11116194
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2342624
2342549
-
Glu
TTC
[Ensembl]
¡û
>W1511398031
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
435344
435269
-
Glu
TTC
[ENA]
¡û
>W1511398032
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
435231
435156
-
Glu
CTC
[ENA]
¡û
>W1511646460
LECE01000026
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
3016
2941
-
Glu
TTC
[ENA]
¡û
>W1610071219
BCTX01000007
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
39504
39429
-
Glu
TTC
[ENA]
¡û
>W1610071220
BCTX01000007
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
39392
39317
-
Glu
CTC
[ENA]
¡û
>W121009674
AGFM01000002
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
60325
60400
+
Glu
TTC
[ENA]
¡û
>W121009675
AGFM01000002
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
60439
60514
+
Glu
CTC
[ENA]
¡û
>W121009676
AGFM01000005
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
5803
5878
+
Glu
TTC
[ENA]
¡û
>W1610784558
LOEX01000052
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
18255
18180
-
Glu
TTC
[ENA]
¡û
>W1710068584
BCTX01000007
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
39504
39429
-
Glu
TTC
[ENA]
¡û
>W1710068585
BCTX01000007
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
39392
39317
-
Glu
CTC
[ENA]
¡û
>W1710602903
FUYP01000027
Alphaproteobacteria
Sphingopyxis flava [FUYP]
20606
20531
-
Glu
TTC
[ENA]
¡û
>W1710602904
FUYP01000027
Alphaproteobacteria
Sphingopyxis flava [FUYP]
20514
20439
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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