This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334848 (25 seq.)
>W1711124765
LUKK01000037
Campylobacterota
Campylobacter hepaticus [LUKK]
50124
50049
-
Ala
GGC
[ENA]
¡û
>w005218
AAFJ01000005
Campylobacterota
Campylobacter upsaliensis RM3195 [AAFJ]
61677
61600
-
Ala
GGC
[ENA]
¡û
>C181062577
CP022347
Campylobacterota
Campylobacter avium LMG 24591 [CP022347]
1583678
1583603
-
Ala
GGC
-
¡û
>C191075367
CP031611
Campylobacterota
Campylobacter hepaticus HV10 [CP031611]
1238197
1238122
-
Ala
GGC
-
¡û
>C191153612
CP037747
Campylobacterota
Campylobacter helveticus 2013D-9613 [CP037747]
1150604
1150679
+
Ala
GGC
-
¡û
>C191209195
LR134372
Campylobacterota
Campylobacter upsaliensis NCTC11541 [LR134372]
1528035
1528110
+
Ala
GGC
-
¡û
>W141562844
JHZN01000010
Campylobacterota
Campylobacter upsaliensis DSM 5365 [JHZN]
32195
32270
+
Ala
GGC
[ENA]
¡û
>W1910584302
JXTW01000009
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
30579
30654
+
Ala
GGC
[ENA]
¡û
>W1910599262
LDWY01000085
Campylobacterota
Campylobacter vulpis 73/13 [LDWY]
18616
18691
+
Ala
GGC
[ENA]
¡û
>W1910599306
LDWZ01000084
Campylobacterota
Campylobacter vulpis 251/13 [LDWZ]
3325
3250
-
Ala
GGC
[ENA]
¡û
>W1910995322
NKYN01000001
Campylobacterota
Campylobacter avium Jun-87 [NKYN]
1109
1034
-
Ala
GGC
[ENA]
¡û
>W1911740259
QURT01000006
Campylobacterota
Campylobacter hepaticus SA32L [QURT]
50115
50040
-
Ala
GGC
[ENA]
¡û
>W1911740303
QURU01000008
Campylobacterota
Campylobacter hepaticus HV16 [QURU]
50943
50868
-
Ala
GGC
[ENA]
¡û
>W1911740345
QURV01000007
Campylobacterota
Campylobacter hepaticus DisRed [QURV]
50111
50036
-
Ala
GGC
[ENA]
¡û
>W1911740388
QURW01000008
Campylobacterota
Campylobacter hepaticus 54L [QURW]
50547
50472
-
Ala
GGC
[ENA]
¡û
>W1911740469
QURY01000007
Campylobacterota
Campylobacter hepaticus AceM3a [QURY]
50111
50036
-
Ala
GGC
[ENA]
¡û
>W1911740513
QURZ01000008
Campylobacterota
Campylobacter hepaticus ACE8659 [QURZ]
50111
50036
-
Ala
GGC
[ENA]
¡û
>W1911740553
QUSA01000007
Campylobacterota
Campylobacter hepaticus ACE1 [QUSA]
50943
50868
-
Ala
GGC
[ENA]
¡û
>W1911740597
QUSB01000008
Campylobacterota
Campylobacter hepaticus 68B [QUSB]
50838
50763
-
Ala
GGC
[ENA]
¡û
>W1911749494
QWGQ01000008
Campylobacterota
Campylobacter hepaticus VicJune18 [QWGQ]
50918
50843
-
Ala
GGC
[ENA]
¡û
>W1911766507
QXDV01000007
Campylobacterota
Campylobacter hepaticus SAJune18 [QXDV]
50065
49990
-
Ala
GGC
[ENA]
¡û
>C151034312
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
53638
53563
-
Ala
GGC
[Ensembl]
¡û
>W11143353
AEPU01000031
Campylobacterota
Campylobacter upsaliensis JV21 [AEPU]
23320
23245
-
Ala
GGC
[ENA]
¡û
>WENV066459
AACY023647983
Marine microbial communities from Global Ocean Sampling (GOS)
188
111
-
Ala
GGC
[ENA]
>W1610935737
LUKK01000037
Campylobacterota
Campylobacter hepaticus [LUKK]
50124
50049
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK