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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335088 (41 seq.)
>WENV180043327
LQAH01028990
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
176
101
-
Trp
CCA
[ENA]
¢þ
>WENV180247765
OBEQ010055307
[OBEQ] groundwater metagenome; groundwater
40173
40248
+
Trp
CCA
[ENA]
¢þ
>WENV180283933
OBID01006806
[OBID] metagenome; sludge
1639
1564
-
Trp
CCA
[ENA]
¢þ
>C08000275
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1896346
1896274
-
Trp
CCA
[Ensembl]
¡û
>WENV183702736
PDVJ01000005
[PDVJ] alkali sediment metagenome; glacial lake sediment
136
61
-
Trp
CCA
[ENA]
¢þ
>WENV170012686
ASRN01001057
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3286
3211
-
Trp
CCA
[ENA]
¢þ
>WENV170012758
ASRO01000084
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012840
ASRP01000741
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012945
ASRQ01000140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170013023
ASRR01000188
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5601
5526
-
Trp
CCA
[ENA]
¢þ
>WENV170014440
AYRG01000115
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170640747
JFJP01024315
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3334
3259
-
Trp
CCA
[ENA]
¢þ
>WENV170654875
JRYL01057939
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
677
602
-
Trp
CCA
[ENA]
¢þ
>WENV170655841
JTFN01082152
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
189
114
-
Trp
CCA
[ENA]
¢þ
>WENV170657702
JTFP01011293
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
292
217
-
Trp
CCA
[ENA]
¢þ
>C181225272
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1896339
1896264
-
Trp
CCA
-
¡û
>C191084442
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2415484
2415409
-
Trp
CCA
-
¡û
>C191084598
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2242655
2242580
-
Trp
CCA
-
¡û
>C191178292
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1850043
1849968
-
Trp
CCA
-
¡û
>W141814473
JQGL01000015
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
24716
24641
-
Trp
CCA
[ENA]
¡û
>C141005653
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1771373
1771298
-
Trp
CCA
[Ensembl]
¡û
>W1911200226
NREO01000010
Campylobacterota
Arcobacter suis CECT7833 [NREO]
19215
19290
+
Trp
CCA
[ENA]
¡û
>W1911200288
NREP01000011
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
126688
126613
-
Trp
CCA
[ENA]
¡û
>W1911426347
NXIG01000016
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
35968
35893
-
Trp
CCA
[ENA]
¡û
>W1911426432
NXII01000007
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
116020
115945
-
Trp
CCA
[ENA]
¡û
>W1911576411
PDJZ01000012
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
46884
46809
-
Trp
CCA
[ENA]
¡û
>W1911576481
PDKC01000002
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
18240
18315
+
Trp
CCA
[ENA]
¡û
>W1911746064
QVQX01000017
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
13327
13252
-
Trp
CCA
[ENA]
¡û
>W1911775194
QXMK01000014
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
13316
13241
-
Trp
CCA
[ENA]
¡û
>W1911775386
QXNB01000019
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
18036
18111
+
Trp
CCA
[ENA]
¡û
>C11100396
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1774452
1774377
-
Trp
CCA
[Ensembl]
¡û
>W1510762845
JAIQ01000129
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
1719
1794
+
Trp
CCA
[ENA]
¡û
>W1510762856
JAIR01000026
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
19579
19504
-
Trp
CCA
[ENA]
¡û
>W1510762907
JAIS01000069
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W1510762929
JAIT01000018
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762956
JAIU01000016
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762992
JAIV01000061
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
17309
17234
-
Trp
CCA
[ENA]
¡û
>W1510763014
JAIW01000018
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510763061
JAIX01000064
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W11143302
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
16227
16152
-
Trp
CCA
[ENA]
¡û
>W11167780
AFNL01000071
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
13498
13423
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK