This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335128 (26 seq.)
>C014473
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
378338
378410
+
Ala
TGC
[Ensembl]
¡û
>C014509
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
8964821
8964749
-
Ala
TGC
[Ensembl]
¡û
>WENV181184961
OEKZ01000021
[OEKZ] metagenome; 1998
5884
5811
-
Ala
TGC
[ENA]
¢þ
>C181060614
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
413059
413132
+
Ala
TGC
-
¡û
>C181060649
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
8755767
8755694
-
Ala
TGC
-
¡û
>C191013175
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
374213
374286
+
Ala
TGC
-
¡û
>C191013210
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
9081148
9081075
-
Ala
TGC
-
¡û
>C191013436
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
373495
373568
+
Ala
TGC
-
¡û
>C191013471
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
9136069
9135996
-
Ala
TGC
-
¡û
>C191128652
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
142047
142120
+
Ala
TGC
-
¡û
>C191128663
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
3129567
3129640
+
Ala
TGC
-
¡û
>C191128670
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
9404352
9404279
-
Ala
TGC
-
¡û
>W1911701637
QNUN01000048
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
2232
2305
+
Ala
TGC
[ENA]
¡û
>C151091025
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8838382
8838455
+
Ala
TGC
[Ensembl]
¡û
>C151091028
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8232585
8232512
-
Ala
TGC
[Ensembl]
¡û
>ENV09000532
ABSO01014520
Freshwater sediment metagenome lwFormate_C1
506
431
-
Ala
TGC
[ENA]
¡û
>C11114305
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
2302752
2302825
+
Ala
TGC
[Ensembl]
¡û
>C11114343
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
7739469
7739396
-
Ala
TGC
[Ensembl]
¡û
>C11119103
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
577112
577185
+
Ala
TGC
[Ensembl]
¡û
>C11119132
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6868906
6868833
-
Ala
TGC
[Ensembl]
¡û
>C121012051
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
130311
130386
+
Ala
TGC
[Ensembl]
¡û
>C121012062
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
3337369
3337444
+
Ala
TGC
[Ensembl]
¡û
>C121012070
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
9896447
9896372
-
Ala
TGC
[Ensembl]
¡û
>W121102907
AKXT01000121
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
179
106
-
Ala
TGC
[ENA]
¡û
>W1710544144
FOAP01000045
Myxococcota
Stigmatella aurantiaca [FOAP]
2566
2639
+
Ala
TGC
[ENA]
¡û
>W1710554377
FOIJ01000037
Myxococcota
Stigmatella erecta [FOIJ]
3662
3589
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK