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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335321 (21 seq.)
>WENV183708706
PDWI01018934
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2588
2513
-
Gly
GCC
[ENA]
¢þ
>C191159668
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1963548
1963623
+
Gly
GCC
-
¡û
>C191159677
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2241770
2241695
-
Gly
GCC
-
¡û
>W1911579592
PEMC01000024
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
6486
6411
-
Gly
GCC
[ENA]
¡û
>W1911579598
PEMC01000033
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
12485
12410
-
Gly
GCC
[ENA]
¡û
>W1911580000
PEMK01000285
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
12642
12567
-
Gly
GCC
[ENA]
¡û
>W1911580010
PEMK01000322
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
14057
14132
+
Gly
GCC
[ENA]
¡û
>W1911580048
PEML01000290
Deinococcota
Thermus scotoductus 12_S12 [PEML]
12460
12385
-
Gly
GCC
[ENA]
¡û
>W1911580055
PEML01000317
Deinococcota
Thermus scotoductus 12_S12 [PEML]
15688
15613
-
Gly
GCC
[ENA]
¡û
>W1911580070
PEMM01000033
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
15688
15613
-
Gly
GCC
[ENA]
¡û
>W1911580103
PEMM01000269
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
12495
12420
-
Gly
GCC
[ENA]
¡û
>W1911580184
PEMO01000177
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
3352
3427
+
Gly
GCC
[ENA]
¡û
>W1911580196
PEMO01000344
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
242
167
-
Gly
GCC
[ENA]
¡û
>W1911580317
PEMR01000019
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
21
96
+
Gly
GCC
[ENA]
¡û
>W1911580329
PEMR01000077
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
14057
14132
+
Gly
GCC
[ENA]
¡û
>W1810889151
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1388425
1388500
+
Gly
GCC
[ENA]
¡û
>W1810889168
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1618794
1618719
-
Gly
GCC
[ENA]
¡û
>C11123035
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
134767
134842
+
Gly
GCC
[Ensembl]
¡û
>C11123074
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
407761
407686
-
Gly
GCC
[Ensembl]
¡û
>C161067098
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1627130
1627205
+
Gly
GCC
[Ensembl]
¡û
>C161067118
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
142757
142682
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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