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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33542 (109 seq.)
>W1710899362
LNIW01000037
Gammaproteobacteria
Stenotrophomonas maltophilia [LNIW]
62821
62732
-
Ser
TGA
[ENA]
¡û
>W1711259550
LYVI01000021
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVI]
3035
2946
-
Ser
TGA
[ENA]
¡û
>W1711283380
LZPD01000016
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPD]
6717
6628
-
Ser
TGA
[ENA]
¡û
>W1711456413
MJAS01000003
Gammaproteobacteria
Stenotrophomonas maltophilia [MJAS]
111621
111710
+
Ser
TGA
[ENA]
¡û
>W1712106517
NIVW01000101
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVW]
4727
4638
-
Ser
TGA
[ENA]
¡û
>W1712106600
NIVX01000119
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVX]
10386
10475
+
Ser
TGA
[ENA]
¡û
>W1712106621
NIVY01000041
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVY]
13725
13814
+
Ser
TGA
[ENA]
¡û
>C171082830
CP018728
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri JS749-3 [CP018728]
2605897
2605986
+
Ser
TGA
-
¡û
>C171082902
CP018731
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri ICMP 7383 [CP018731]
3660282
3660193
-
Ser
TGA
-
¡û
>C171083096
CP018756
Gammaproteobacteria
Stenotrophomonas maltophilia AA1 [CP018756]
2363675
2363586
-
Ser
TGA
-
¡û
>W131051352
AMXM01000008
Gammaproteobacteria
Stenotrophomonas maltophilia EPM1 [AMXM]
1037334
1037245
-
Ser
TGA
[ENA]
¡û
>W131109931
APIT01000053
Gammaproteobacteria
Stenotrophomonas maltophilia AU12-09 [APIT]
44672
44583
-
Ser
TGA
[ENA]
¡û
>WENV181379261
OFRD01000153
[OFRD] wastewater metagenome; Exp Tend CN 100WW
5716
5805
+
Ser
TGA
[ENA]
¢þ
>WENV181383908
OFRH01000680
[OFRH] wastewater metagenome; Exp Tend NO 100WW
642
731
+
Ser
TGA
[ENA]
¢þ
>WENV181385898
OFRL01000062
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
5254
5343
+
Ser
TGA
[ENA]
¢þ
>WENV181804845
OGSG01002196
[OGSG] human gut metagenome; fecal sample 2 from infant 7
673
762
+
Ser
TGA
[ENA]
¢þ
>W141245820
CALN01000923
Gammaproteobacteria
Stenotrophomonas maltophilia SKK35 [CALN]
764
675
-
Ser
TGA
[ENA]
¡û
>W141251660
CBQT010000098
Gammaproteobacteria
Stenotrophomonas maltophilia stmalt0377 [CBQT]
2623
2534
-
Ser
TGA
[ENA]
¡û
>W141251678
CBQU010000025
Gammaproteobacteria
Stenotrophomonas maltophilia stmalt0435 [CBQU]
28529
28440
-
Ser
TGA
[ENA]
¡û
>WENV182796990
OJST01000019
[OJST] human gut metagenome; human gut
50336
50247
-
Ser
TGA
[ENA]
¢þ
>WENV182797639
OJTA01003701
[OJTA] human gut metagenome; human gut
51
140
+
Ser
TGA
[ENA]
¢þ
>WENV182798340
OJTH01000107
[OJTH] human gut metagenome; human gut
5280
5369
+
Ser
TGA
[ENA]
¢þ
>C08010071
CP001111
Gammaproteobacteria
Stenotrophomonas maltophilia R551-3 [CP001111]
2825424
2825338
-
Ser
TGA
[Ensembl]
¡û
>WENV183738684
PJUE01000096
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
16380
16469
+
Ser
TGA
[ENA]
¢þ
>WENV183738897
PJUE01000377
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
31639
31550
-
Ser
TGA
[ENA]
¢þ
>WENV183740149
PJUF01000486
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
605
694
+
Ser
TGA
[ENA]
¢þ
>WENV183740196
PJUF01000698
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7497
7408
-
Ser
TGA
[ENA]
¢þ
>W141484530
JFYS01000014
Gammaproteobacteria
Stenotrophomonas sp. RIT309 [JFYS]
71059
70970
-
Ser
TGA
[ENA]
¡û
>C181014161
CP014014
Gammaproteobacteria
Stenotrophomonas maltophilia FDAARGOS_92 [CP014014]
2001924
2001835
-
Ser
TGA
-
¡û
>C181021784
CP016878
Gammaproteobacteria
Xanthomonas hortorum B07-007 [CP016878]
32484
32573
+
Ser
TGA
-
¡û
>C181056452
CP022053
Gammaproteobacteria
Stenotrophomonas maltophilia FDAARGOS_325 [CP022053]
82610
82699
+
Ser
TGA
-
¡û
>C181115658
CP025298
Gammaproteobacteria
Stenotrophomonas maltophilia CSM2 [CP025298]
2940232
2940143
-
Ser
TGA
-
¡û
>C191073945
CP031167
Gammaproteobacteria
Stenotrophomonas sp. ASS1 [CP031167]
2801319
2801230
-
Ser
TGA
-
¡û
>W09119462
ACDV01000032
Gammaproteobacteria
Stenotrophomonas sp. SKA14 [ACDV]
72501
72590
+
Ser
TGA
[ENA]
¡û
>W1910550032
FZQI01000004
Gammaproteobacteria
Stenotrophomonas sp. CC120222-04 [FZQI]
404189
404100
-
Ser
TGA
[ENA]
¡û
>W1910647564
LXXA01000057
Gammaproteobacteria
Stenotrophomonas maltophilia SM-20065 [LXXA]
59819
59730
-
Ser
TGA
[ENA]
¡û
>W1910647617
LXXB01000002
Gammaproteobacteria
Stenotrophomonas maltophilia SM-3226 [LXXB]
106288
106377
+
Ser
TGA
[ENA]
¡û
>W1910647878
LXXF01000013
Gammaproteobacteria
Stenotrophomonas maltophilia SM-480 [LXXF]
54794
54705
-
Ser
TGA
[ENA]
¡û
>W1910647935
LXXG01000068
Gammaproteobacteria
Stenotrophomonas maltophilia SM-11522 [LXXG]
62710
62621
-
Ser
TGA
[ENA]
¡û
>W1910648196
LXXK01000024
Gammaproteobacteria
Stenotrophomonas maltophilia SM-19467 [LXXK]
60505
60416
-
Ser
TGA
[ENA]
¡û
>W1910649203
LXXZ01000087
Gammaproteobacteria
Stenotrophomonas sepilia SM-16975 [LXXZ]
67348
67259
-
Ser
TGA
[ENA]
¡û
>W1910693071
MDEF01000085
Gammaproteobacteria
Xanthomonas hortorum pv. hederae CFBP4925 [MDEF]
1267
1178
-
Ser
TGA
[ENA]
¡û
>W1910745963
MIGW01000003
Gammaproteobacteria
Xanthomonas arboricola pv. zantedeschiae CFBP 7410 [MIGW]
214877
214966
+
Ser
TGA
[ENA]
¡û
>W1910786231
MQWM01000074
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2006 [MQWM]
33894
33805
-
Ser
TGA
[ENA]
¡û
>W1910786500
MQWR01000034
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2011 [MQWR]
3407
3496
+
Ser
TGA
[ENA]
¡û
>W1910786814
MQWV01000062
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2013_STM2 [MQWV]
15818
15729
-
Ser
TGA
[ENA]
¡û
>W1910786994
MQWY01000055
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2003_STM2 [MQWY]
105747
105836
+
Ser
TGA
[ENA]
¡û
>W1910787135
MQXA01000058
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2006_STM1 [MQXA]
33623
33534
-
Ser
TGA
[ENA]
¡û
>W1910787257
MQXC01000041
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2007 [MQXC]
33700
33611
-
Ser
TGA
[ENA]
¡û
>W1910788061
MQXO01000017
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2013 [MQXO]
108345
108434
+
Ser
TGA
[ENA]
¡û
>W1910788132
MQXP01000059
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2014 [MQXP]
60506
60417
-
Ser
TGA
[ENA]
¡û
>W1910789424
MQYI01000059
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2008_STM2 [MQYI]
109041
109130
+
Ser
TGA
[ENA]
¡û
>W1910789484
MQYJ01000064
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2009 [MQYJ]
19596
19507
-
Ser
TGA
[ENA]
¡û
>W1910789939
MQYQ01000070
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2010 [MQYQ]
19646
19557
-
Ser
TGA
[ENA]
¡û
>W1910790003
MQYR01000090
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2011 [MQYR]
27200
27289
+
Ser
TGA
[ENA]
¡û
>W1910790259
MQYV01000030
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2008_colA [MQYV]
88120
88031
-
Ser
TGA
[ENA]
¡û
>W1910790325
MQYW01000031
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2008_colB [MQYW]
93645
93556
-
Ser
TGA
[ENA]
¡û
>W1910790563
MQYZ01000065
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2011 [MQYZ]
97225
97314
+
Ser
TGA
[ENA]
¡û
>W1910790739
MQZC01000027
Gammaproteobacteria
Stenotrophomonas maltophilia GC_2013_STM1 [MQZC]
3130
3219
+
Ser
TGA
[ENA]
¡û
>W1910791034
MQZG01000055
Gammaproteobacteria
Stenotrophomonas maltophilia MC_2009 [MQZG]
98165
98254
+
Ser
TGA
[ENA]
¡û
>W1910791910
MQZT01000024
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2011 [MQZT]
97794
97883
+
Ser
TGA
[ENA]
¡û
>W1910791958
MQZU01000010
Gammaproteobacteria
Stenotrophomonas maltophilia SanG_2012 [MQZU]
146197
146286
+
Ser
TGA
[ENA]
¡û
>W1910887257
NEQU01000003
Gammaproteobacteria
Stenotrophomonas maltophilia PS5 [NEQU]
2031336
2031247
-
Ser
TGA
[ENA]
¡û
>W1910887454
NEQX01000014
Gammaproteobacteria
Stenotrophomonas maltophilia EP13 [NEQX]
468429
468518
+
Ser
TGA
[ENA]
¡û
>W1910887653
NERA01000005
Gammaproteobacteria
Stenotrophomonas maltophilia C357 [NERA]
825555
825466
-
Ser
TGA
[ENA]
¡û
>W1910888131
NERH01000008
Gammaproteobacteria
Stenotrophomonas maltophilia E729 [NERH]
800635
800546
-
Ser
TGA
[ENA]
¡û
>W1911708905
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1892214
1892125
-
Ser
TGA
[ENA]
¡û
>W1911765722
QXDB01000001
Gammaproteobacteria
Stenotrophomonas sp. AG209 [QXDB]
828234
828145
-
Ser
TGA
[ENA]
¡û
>W1810377079
PXII01000002
Gammaproteobacteria
Stenotrophomonas maltophilia SP4501 [PXII]
42073
41984
-
Ser
TGA
[ENA]
¡û
>W1810377164
PXIJ01000020
Gammaproteobacteria
Stenotrophomonas maltophilia SP4330 [PXIJ]
32904
32815
-
Ser
TGA
[ENA]
¡û
>W1810394567
PYBT01000010
Gammaproteobacteria
Stenotrophomonas maltophilia 17307 [PYBT]
63102
63013
-
Ser
TGA
[ENA]
¡û
>W1810402614
PYHN01000008
Gammaproteobacteria
Stenotrophomonas maltophilia 16185 [PYHN]
63055
62966
-
Ser
TGA
[ENA]
¡û
>W1810474539
QAIJ01000219
Gammaproteobacteria
Stenotrophomonas sp. HMWF023 [QAIJ]
2924
3013
+
Ser
TGA
[ENA]
¡û
>W1810475558
QAJC01001428
Gammaproteobacteria
Stenotrophomonas sp. HMWF022 [QAJC]
2591
2680
+
Ser
TGA
[ENA]
¡û
>W1510667651
CWHS01000010
Gammaproteobacteria
Stenotrophomonas maltophilia [CWHS]
57311
57222
-
Ser
TGA
[ENA]
¡û
>W1511438393
JUMH01000013
Gammaproteobacteria
Stenotrophomonas maltophilia 951_SMAL [JUMH]
3676
3765
+
Ser
TGA
[ENA]
¡û
>W1511440336
JUPB01000128
Gammaproteobacteria
Stenotrophomonas maltophilia 892_SMAL [JUPB]
6607
6696
+
Ser
TGA
[ENA]
¡û
>W1511441155
JUQE01000027
Gammaproteobacteria
Stenotrophomonas maltophilia 862_SMAL [JUQE]
40906
40995
+
Ser
TGA
[ENA]
¡û
>W1511441211
JUQF01000239
Gammaproteobacteria
Stenotrophomonas maltophilia 860_SMAL [JUQF]
43978
43889
-
Ser
TGA
[ENA]
¡û
>W1511441384
JUQM01000084
Gammaproteobacteria
Stenotrophomonas maltophilia 854_SMAL [JUQM]
40896
40985
+
Ser
TGA
[ENA]
¡û
>W1511441626
JUQT01000621
Gammaproteobacteria
Stenotrophomonas maltophilia 847.rep1_SMAL [JUQT]
3745
3834
+
Ser
TGA
[ENA]
¡û
>W1511451217
JVCV01000080
Gammaproteobacteria
Stenotrophomonas maltophilia 543_SMAL [JVCV]
6859
6770
-
Ser
TGA
[ENA]
¡û
>W1511456528
JVHP01000045
Gammaproteobacteria
Stenotrophomonas maltophilia 424_SMAL [JVHP]
23858
23947
+
Ser
TGA
[ENA]
¡û
>W1511457084
JVHZ01000077
Gammaproteobacteria
Stenotrophomonas maltophilia 416_SMAL [JVHZ]
23943
24032
+
Ser
TGA
[ENA]
¡û
>W1511461030
JVMC01000211
Gammaproteobacteria
Stenotrophomonas maltophilia 31_SMAL [JVMC]
6538
6627
+
Ser
TGA
[ENA]
¡û
>W1511468839
JVUR01000106
Gammaproteobacteria
Stenotrophomonas maltophilia 1304_SMAL [JVUR]
19278
19189
-
Ser
TGA
[ENA]
¡û
>W1511468913
JVUT01000107
Gammaproteobacteria
Stenotrophomonas maltophilia 1302_SMAL [JVUT]
6393
6482
+
Ser
TGA
[ENA]
¡û
>W1511474498
JWBW01000048
Gammaproteobacteria
Stenotrophomonas maltophilia 1136_SMAL [JWBW]
21919
21830
-
Ser
TGA
[ENA]
¡û
>W1511543402
JZIU01000001
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS4 [JZIU]
3451175
3451264
+
Ser
TGA
[ENA]
¡û
>W1511543578
JZIW01000005
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS6 [JZIW]
57468
57379
-
Ser
TGA
[ENA]
¡û
>W1511544592
JZJS01000101
Gammaproteobacteria
Xanthomonas hortorum SM177-10 [JZJS]
21580
21669
+
Ser
TGA
[ENA]
¡û
>W1511544694
JZJU01000140
Gammaproteobacteria
Xanthomonas hortorum SM220-10 [JZJU]
2926
2837
-
Ser
TGA
[ENA]
¡û
>W1511544979
JZKA01000059
Gammaproteobacteria
Xanthomonas hortorum SM795-12 [JZKA]
21515
21604
+
Ser
TGA
[ENA]
¡û
>W1511551713
JZTX01000001
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS7 [JZTX]
2864760
2864671
-
Ser
TGA
[ENA]
¡û
>W1511642245
LDVP01000106
Gammaproteobacteria
Stenotrophomonas maltophilia A2 [LDVP]
5201
5112
-
Ser
TGA
[ENA]
¡û
>W1511642263
LDVQ01000008
Gammaproteobacteria
Stenotrophomonas maltophilia B1 [LDVQ]
12946
12857
-
Ser
TGA
[ENA]
¡û
>W1511642397
LDVT01000106
Gammaproteobacteria
Stenotrophomonas maltophilia C11 [LDVT]
11454
11365
-
Ser
TGA
[ENA]
¡û
>W1610085628
CVIU01000021
Gammaproteobacteria
Stenotrophomonas maltophilia [CVIU]
82148
82059
-
Ser
TGA
[ENA]
¡û
>W1610085675
CVIV01000039
Gammaproteobacteria
Stenotrophomonas indicatrix maltophilia [CVIV]
23270
23181
-
Ser
TGA
[ENA]
¡û
>W1610586899
LDJI01000027
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
147764
147853
+
Ser
TGA
[ENA]
¡û
>W1610587201
LDJN01000042
Gammaproteobacteria
Stenotrophomonas pavanii [LDJN]
63136
63047
-
Ser
TGA
[ENA]
¡û
>W1610759765
LNIW01000037
Gammaproteobacteria
Stenotrophomonas maltophilia [LNIW]
62821
62732
-
Ser
TGA
[ENA]
¡û
>W1611021639
LYVI01000021
Gammaproteobacteria
Stenotrophomonas maltophilia [LYVI]
3035
2946
-
Ser
TGA
[ENA]
¡û
>W1611042018
LZPD01000016
Gammaproteobacteria
Stenotrophomonas maltophilia [LZPD]
6717
6628
-
Ser
TGA
[ENA]
¡û
>W1710090217
CVIU01000021
Gammaproteobacteria
Stenotrophomonas maltophilia [CVIU]
82148
82059
-
Ser
TGA
[ENA]
¡û
>W1710090264
CVIV01000039
Gammaproteobacteria
Stenotrophomonas indicatrix maltophilia [CVIV]
23270
23181
-
Ser
TGA
[ENA]
¡û
>W1710520469
FNFQ01000001
Gammaproteobacteria
Stenotrophomonas pavanii [FNFQ]
11354
11265
-
Ser
TGA
[ENA]
¡û
>W1710706029
LDJI01000027
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
147764
147853
+
Ser
TGA
[ENA]
¡û
>W1710706331
LDJN01000042
Gammaproteobacteria
Stenotrophomonas pavanii [LDJN]
63136
63047
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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