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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.336114 (25 seq.)
>C171032914
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
166795
166871
+
Met
CAT
-
¡û
>C171032920
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
792920
792996
+
Met
CAT
-
¡û
>C171032947
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2332786
2332710
-
Met
CAT
-
¡û
>C171032950
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2282967
2282891
-
Met
CAT
-
¡û
>C171032959
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1548423
1548347
-
Met
CAT
-
¡û
>WENV180017414
FSWX01000158
[FSWX] metagenome; soil
3365
3442
+
fMet
CAT
[ENA]
¢þ
>W141226093
BAJT01000033
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
89
13
-
Met
CAT
[ENA]
¡û
>WENV170669551
LAHS01000534
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
658
734
+
Met
CAT
[ENA]
¢þ
>C191090652
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1862548
1862624
+
Met
CAT
-
¡û
>C191090656
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1906842
1906918
+
Met
CAT
-
¡û
>C191090673
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
995453
995377
-
Met
CAT
-
¡û
>C191090676
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
986786
986710
-
Met
CAT
-
¡û
>C191090679
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
969977
969901
-
Met
CAT
-
¡û
>C191090693
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
150571
150495
-
Met
CAT
-
¡û
>W1911491953
OAOQ01000047
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
49
125
+
Met
CAT
[ENA]
¡û
>W1810000681
BEWM01000030
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
77
1
-
Met
CAT
[ENA]
¡û
>C161095999
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
909636
909712
+
Met
CAT
-
¡û
>C161096004
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
1063363
1063439
+
Met
CAT
-
¡û
>C161096009
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
2036721
2036797
+
Met
CAT
-
¡û
>W1610076874
BCZB01000057
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
2712
2788
+
Met
CAT
[ENA]
¡û
>C131009965
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
3445788
3445712
-
Met
CAT
[Ensembl]
¡û
>C131009982
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
969721
969645
-
Met
CAT
[Ensembl]
¡û
>C131009987
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
815993
815917
-
Met
CAT
[Ensembl]
¡û
>W1710074563
BCZB01000057
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
2712
2788
+
Met
CAT
[ENA]
¡û
>W1710624824
JOPH01000083
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
5365
5441
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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