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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.336284 (60 seq.)
>W131158918
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
794096
794020
-
Met
CAT
[ENA]
¡û
>C016005
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
63740
63816
+
Met
CAT
[Ensembl]
¡û
>C016031
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1974532
1974456
-
Met
CAT
[Ensembl]
¡û
>C016048
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
147281
147357
+
Met
CAT
[Ensembl]
¡û
>C171110784
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
1162586
1162510
-
Met
CAT
-
¡û
>W141277331
JAEM01000087
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
6322
6246
-
Met
CAT
[ENA]
¡û
>W141277334
JAEM01000091
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
77
1
-
Met
CAT
[ENA]
¡û
>WENV183729126
PJTQ01005606
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
962
886
-
fMet
CAT
[ENA]
¢þ
>WENV183738120
PJUD01086896
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
335
259
-
fMet
CAT
[ENA]
¢þ
>WENV183739615
PJUE01041523
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
297
373
+
fMet
CAT
[ENA]
¢þ
>WENV183740872
PJUF01014330
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
171
95
-
fMet
CAT
[ENA]
¢þ
>PL191000034
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
63740
63816
+
Met
CAT
[Ensembl]
¡û
>PL191000060
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1974532
1974456
-
Met
CAT
[Ensembl]
¡û
>C191134376
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1658156
1658232
+
Met
CAT
-
¡û
>C191134397
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
715822
715746
-
Met
CAT
-
¡û
>C191134407
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
147006
147082
+
Met
CAT
-
¡û
>W09103055
AAIT01000006
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
263636
263712
+
Met
CAT
[ENA]
¡û
>W09103070
AAIT01000016
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
89617
89541
-
Met
CAT
[ENA]
¡û
>W09103076
AAIT01000035
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
484
560
+
Met
CAT
[ENA]
¡û
>W1910549849
FZQB01000001
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
155
231
+
Met
CAT
[ENA]
¡û
>W1911705536
QOKZ01000026
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
49
125
+
Met
CAT
[ENA]
¡û
>W1911705539
QOKZ01000030
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
5762
5838
+
Met
CAT
[ENA]
¡û
>W1911705540
QOKZ01000035
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
49
125
+
Met
CAT
[ENA]
¡û
>W1911810959
QZCG01000003
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
50
126
+
Met
CAT
[ENA]
¡û
>W1911810989
QZCG01000033
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
78
2
-
Met
CAT
[ENA]
¡û
>W1911810990
QZCG01000040
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
50
126
+
Met
CAT
[ENA]
¡û
>W1911813185
QZEV01000002
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
112070
111994
-
Met
CAT
[ENA]
¡û
>W1911813195
QZEV01000022
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
51
127
+
Met
CAT
[ENA]
¡û
>W1911813224
QZEV01000160
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
77
1
-
Met
CAT
[ENA]
¡û
>W1911813227
QZEV01000230
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
51
127
+
Met
CAT
[ENA]
¡û
>W1810236006
PPGA01000028
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
56677
56753
+
Met
CAT
[ENA]
¡û
>W1810236007
PPGA01000051
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
25
101
+
Met
CAT
[ENA]
¡û
>W1810585336
QFCQ01000145
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
5690
5766
+
Met
CAT
[ENA]
¡û
>W1810750760
QOZU01000155
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
64
140
+
Met
CAT
[ENA]
¡û
>W1810750762
QOZU01000167
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
2496
2420
-
Met
CAT
[ENA]
¡û
>W1810762313
QPML01000027
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
4
80
+
Met
CAT
[ENA]
¡û
>W1511348577
JRKN01000051
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
13276
13200
-
Met
CAT
[ENA]
¡û
>W1511348581
JRKN01000065
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
5617
5693
+
Met
CAT
[ENA]
¡û
>W1511348582
JRKN01000091
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
51
127
+
Met
CAT
[ENA]
¡û
>W1511348687
JRKQ01000021
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
38918
38842
-
Met
CAT
[ENA]
¡û
>W11143068
AEPN01000092
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
79
3
-
Met
CAT
[ENA]
¡û
>W1710513643
FNAH01000028
Alphaproteobacteria
Paracoccus isoporae [FNAH]
2331
2255
-
Met
CAT
[ENA]
¡û
>W1710518483
FNEA01000053
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
16188
16112
-
Met
CAT
[ENA]
¡û
>W1710518488
FNEA01000070
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
77
1
-
Met
CAT
[ENA]
¡û
>W1710518489
FNEA01000074
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
3509
3433
-
Met
CAT
[ENA]
¡û
>W1710547710
FODE01000058
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
305
381
+
Met
CAT
[ENA]
¡û
>W1710553426
FOHO01000034
Alphaproteobacteria
Paracoccus homiensis [FOHO]
175
99
-
Met
CAT
[ENA]
¡û
>W1710555545
FOJO01000006
Alphaproteobacteria
Paracoccus halophilus [FOJO]
77
1
-
Met
CAT
[ENA]
¡û
>W1710555569
FOJO01000042
Alphaproteobacteria
Paracoccus halophilus [FOJO]
5617
5693
+
Met
CAT
[ENA]
¡û
>W1710571580
FOWA01000043
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
78
2
-
Met
CAT
[ENA]
¡û
>W1710571589
FOWA01000095
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
222
298
+
Met
CAT
[ENA]
¡û
>W1710574704
FOYK01000054
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
273
349
+
Met
CAT
[ENA]
¡û
>W1710574709
FOYK01000070
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
5538
5614
+
Met
CAT
[ENA]
¡û
>W1710574710
FOYK01000075
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
18
94
+
Met
CAT
[ENA]
¡û
>W1710592371
FRCK01000003
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
19
95
+
Met
CAT
[ENA]
¡û
>W1710592394
FRCK01000017
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
19
95
+
Met
CAT
[ENA]
¡û
>W1710592397
FRCK01000021
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
77
1
-
Met
CAT
[ENA]
¡û
>W1710596199
FTMK01000016
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
213
289
+
Met
CAT
[ENA]
¡û
>W1710596213
FTMK01000048
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
78
2
-
Met
CAT
[ENA]
¡û
>W1710599562
FTOU01000039
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
192
116
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK