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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.336760 (12 seq.)
>WENV180102929
OAOZ01057046
[OAOZ] marine metagenome; ENVO:00002010
130
54
-
Ile
GAT
[ENA]
¢þ
>WENV181379854
OFRD01011916
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1081
1005
-
Ile
GAT
[ENA]
¢þ
>W1911647516
QAJN01000022
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
3811
3735
-
Ile
GAT
[ENA]
¡û
>W1810196606
PNEO01000047
Betaproteobacteria
Burkholderia sp. WAC0059 [PNEO]
3652
3576
-
Ile
GAT
[ENA]
¡û
>SRA1003606
SRR002327.65505
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
85
161
+
Ile
GAT
[SRA]
>SRA1003851
SRR002327.234449
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
4
80
+
Ile
GAT
[SRA]
>C161059519
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
919922
919998
+
Ile
GAT
[Ensembl]
¡û
>C161059521
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
925746
925822
+
Ile
GAT
[Ensembl]
¡û
>C161059556
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
5148744
5148820
+
Ile
GAT
[Ensembl]
¡û
>C161059558
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
5154568
5154644
+
Ile
GAT
[Ensembl]
¡û
>C161059560
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
5160392
5160468
+
Ile
GAT
[Ensembl]
¡û
>C161059562
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
5166215
5166291
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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