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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33688 (44 seq.)
>W1711175829
LWFA01000335
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
12955
13044
+
Ser
CGA
[ENA]
¡û
>W1711282582
LZNT01000054
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
109122
109211
+
Ser
CGA
[ENA]
¡û
>W1711695303
MSIT01000001
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
144523
144612
+
Ser
CGA
[ENA]
¡û
>W1711709268
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
1869465
1869554
+
Ser
CGA
[ENA]
¡û
>C171032421
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
289920
290009
+
Ser
CGA
-
¡û
>C171033701
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
3573700
3573611
-
Ser
CGA
-
¡û
>C171035440
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
3893734
3893823
+
Ser
CGA
-
¡û
>W131231304
AUIJ01000006
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
149866
149955
+
Ser
CGA
[ENA]
¡û
>w011959
AALY01000002
Alphaproteobacteria
Roseovarius nubinhibens ISM [AALY]
844703
844794
+
Ser
CGA
[ENA]
¡û
>WENV180294401
OBIY01122130
[OBIY] beach sand metagenome; beach sand
68
157
+
Ser
CGA
[ENA]
¢þ
>W141064413
APVH01000039
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
16433
16344
-
Ser
CGA
[ENA]
¡û
>W141065745
AQQW01000004
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
63824
63735
-
Ser
CGA
[ENA]
¡û
>W141278727
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2901868
2901779
-
Ser
CGA
[ENA]
¡û
>W141284826
JAME01000031
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
59660
59749
+
Ser
CGA
[ENA]
¡û
>WENV170652582
JRYH01007175
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1032
943
-
Ser
CGA
[ENA]
¢þ
>WENV170682484
LFIK01000189
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
42206
42295
+
Ser
CGA
[ENA]
¢þ
>WENV170682616
LFIK01000540
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
91
2
-
Ser
CGA
[ENA]
¢þ
>WENV170683014
LFIK01003467
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
36
125
+
Ser
CGA
[ENA]
¢þ
>WENV170683648
LFIK01017817
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5238
5149
-
Ser
CGA
[ENA]
¢þ
>W141485052
JFZB01000062
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
1827
1738
-
Ser
CGA
[ENA]
¡û
>C181060611
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
355717
355628
-
Ser
CGA
-
¡û
>W1910442668
FWFK01000003
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
258970
259059
+
Ser
CGA
[ENA]
¡û
>W1910499782
FXYF01000008
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
141769
141858
+
Ser
CGA
[ENA]
¡û
>W1910548472
FZON01000083
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
11461
11550
+
Ser
CGA
[ENA]
¡û
>W1911653457
QDFI01000007
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
97646
97735
+
Ser
CGA
[ENA]
¡û
>W1810061247
PDNI01000010
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
111345
111434
+
Ser
CGA
[ENA]
¡û
>W1810063492
PDUV01000009
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
247336
247425
+
Ser
CGA
[ENA]
¡û
>W1810101679
PGTC01000008
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
101470
101381
-
Ser
CGA
[ENA]
¡û
>W1810503959
QBKN01000014
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
546
457
-
Ser
CGA
[ENA]
¡û
>W1810692277
QLIW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
183088
182999
-
Ser
CGA
[ENA]
¡û
>W1810913120
QVMW01000005
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
8918
8829
-
Ser
CGA
[ENA]
¡û
>C151006776
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
2308066
2307977
-
Ser
CGA
[Ensembl]
¡û
>W1610018463
AQQX01000011
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
14174
14085
-
Ser
CGA
[ENA]
¡û
>W1610578287
LAXI01000004
Alphaproteobacteria
Roseovarius indicus [LAXI]
95875
95786
-
Ser
CGA
[ENA]
¡û
>W1610984142
LWFA01000335
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
12955
13044
+
Ser
CGA
[ENA]
¡û
>W1710015679
AQQX01000011
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
14174
14085
-
Ser
CGA
[ENA]
¡û
>W1710515011
FNBL01000001
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
219545
219634
+
Ser
CGA
[ENA]
¡û
>W1710524231
FNIO01000002
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
324891
324802
-
Ser
CGA
[ENA]
¡û
>W1710558239
FOLR01000006
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
244189
244278
+
Ser
CGA
[ENA]
¡û
>W1710559846
FOMY01000001
Alphaproteobacteria
Roseovarius indicus [FOMY]
543614
543525
-
Ser
CGA
[ENA]
¡û
>W1710576219
FOZW01000001
Alphaproteobacteria
Alloyangia pacifica [FOZW]
464515
464426
-
Ser
CGA
[ENA]
¡û
>W1710587517
FQYO01000006
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
166253
166342
+
Ser
CGA
[ENA]
¡û
>W1710599120
FTOM01000001
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
694165
694076
-
Ser
CGA
[ENA]
¡û
>W1710697160
LAXI01000004
Alphaproteobacteria
Roseovarius indicus [LAXI]
95875
95786
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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