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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337389 (19 seq.)
>W131224777
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
822069
821994
-
His
GTG
[ENA]
¡û
>W131224778
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
821951
821876
-
His
GTG
[ENA]
¡û
>WENV180043338
LQAH01031993
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
237
312
+
His
GTG
[ENA]
¢þ
>WENV180043546
LQAI01000561
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
585
660
+
His
GTG
[ENA]
¢þ
>WENV180044008
LQAJ01000252
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2209
2134
-
His
GTG
[ENA]
¢þ
>WENV183707586
PDWI01009202
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8111
8186
+
His
GTG
[ENA]
¢þ
>W09117975
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
698647
698572
-
His
GTG
[ENA]
¡û
>W09117976
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
698527
698452
-
His
GTG
[ENA]
¡û
>C141011919
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2886632
2886707
+
His
GTG
-
¡û
>C141011920
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2886750
2886825
+
His
GTG
-
¡û
>C09104209
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2393807
2393882
+
His
GTG
[Ensembl]
¡û
>C09104210
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2393927
2394002
+
His
GTG
[Ensembl]
¡û
>W10111355
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>C11106884
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1323536
1323461
-
His
GTG
[Ensembl]
¡û
>W11114298
ADDI01000001
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
224338
224263
-
His
GTG
[ENA]
¡û
>C131018101
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2886632
2886707
+
His
GTG
[Ensembl]
¡û
>C131018102
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2886750
2886825
+
His
GTG
[Ensembl]
¡û
>C131017941
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3363070
3362995
-
His
GTG
[Ensembl]
¡û
>W1710607115
FWZU01000001
Thermodesulfobacteriota
Desulfovibrio gilichinskyi K3S [FWZU]
1014989
1015064
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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