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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338241 (110 seq.)
>W1710894304
LNFT01000041
Gammaproteobacteria
Escherichia coli [LNFT]
1894
1820
-
Gly
TCC
[ENA]
¡û
>W1710930610
LOGX01000079
Gammaproteobacteria
Escherichia coli [LOGX]
2491
2417
-
Gly
TCC
[ENA]
¡û
>W1710932450
LOIG01000088
Gammaproteobacteria
Escherichia coli [LOIG]
3082
3008
-
Gly
TCC
[ENA]
¡û
>W131048123
AMUG01000363
Gammaproteobacteria
Escherichia coli 5905 [AMUG]
1614
1540
-
Gly
TCC
[ENA]
¡û
>W1711235819
LYDJ01000621
Gammaproteobacteria
Escherichia coli [LYDJ]
13482
13556
+
Gly
TCC
[ENA]
¡û
>W1711434572
MINC01000011
Gammaproteobacteria
Escherichia coli [MINC]
90901
90975
+
Gly
TCC
[ENA]
¡û
>W1711452846
MIXF01000177
Gammaproteobacteria
Escherichia coli [MIXF]
124
50
-
Gly
TCC
[ENA]
¡û
>W1711696307
MSJS02000043
Gammaproteobacteria
Shigella boydii [MSJS]
125
51
-
Gly
TCC
[ENA]
¡û
>W1711777418
MVLB01000122
Gammaproteobacteria
Escherichia coli [MVLB]
2162
2088
-
Gly
TCC
[ENA]
¡û
>W1711777595
MVLD01000097
Gammaproteobacteria
Escherichia coli [MVLD]
1856
1930
+
Gly
TCC
[ENA]
¡û
>W1711777677
MVLE01000070
Gammaproteobacteria
Escherichia coli [MVLE]
4889
4963
+
Gly
TCC
[ENA]
¡û
>W1711777866
MVLG01000064
Gammaproteobacteria
Escherichia coli [MVLG]
1856
1930
+
Gly
TCC
[ENA]
¡û
>W1711777951
MVLH01000090
Gammaproteobacteria
Escherichia coli [MVLH]
1348
1274
-
Gly
TCC
[ENA]
¡û
>W1711778030
MVLI01000051
Gammaproteobacteria
Escherichia coli [MVLI]
1348
1274
-
Gly
TCC
[ENA]
¡û
>W1711778127
MVLJ01000113
Gammaproteobacteria
Escherichia coli [MVLJ]
1286
1212
-
Gly
TCC
[ENA]
¡û
>W1711778214
MVLK01000079
Gammaproteobacteria
Escherichia coli [MVLK]
3399
3325
-
Gly
TCC
[ENA]
¡û
>W1711778302
MVLL01000075
Gammaproteobacteria
Escherichia coli [MVLL]
3046
3120
+
Gly
TCC
[ENA]
¡û
>W1712015086
NENY01000060
Gammaproteobacteria
Escherichia coli [NENY]
3008
3082
+
Gly
TCC
[ENA]
¡û
>W131048130
AMUG01000370
Gammaproteobacteria
Escherichia coli 5905 [AMUG]
2992
2918
-
Gly
TCC
[ENA]
¡û
>W141013312
AIAD01000291
Gammaproteobacteria
Escherichia coli C1244_91 [AIAD]
216
142
-
Gly
TCC
[ENA]
¡û
>W141013378
AIAE01000166
Gammaproteobacteria
Escherichia coli C12_92 [AIAE]
1724
1798
+
Gly
TCC
[ENA]
¡û
>W141013437
AIAF01000115
Gammaproteobacteria
Escherichia coli C154_11 [AIAF]
1371
1445
+
Gly
TCC
[ENA]
¡û
>W141013617
AIAH01000380
Gammaproteobacteria
Escherichia coli C157_11 [AIAH]
410
336
-
Gly
TCC
[ENA]
¡û
>W141017272
AICD01000047
Gammaproteobacteria
Escherichia coli C93_11 [AICD]
927
853
-
Gly
TCC
[ENA]
¡û
>WENV180400280
OBRH01001741
[OBRH] human gut metagenome; ENVO:feces
475
401
-
Gly
TCC
[ENA]
¢þ
>W141049922
AMUP01000136
Gammaproteobacteria
Escherichia coli 7798 [AMUP]
1281
1207
-
Gly
TCC
[ENA]
¡û
>WENV181992001
OHAQ01012424
[OHAQ] human gut metagenome; faeces
180
106
-
Gly
TCC
[ENA]
¢þ
>WENV182600303
OJJG01000705
[OJJG] metagenome; faeces
2430
2504
+
Gly
TCC
[ENA]
¢þ
>WENV182627252
OJKP01087176
[OJKP] metagenome; faeces
281
207
-
Gly
TCC
[ENA]
¢þ
>W141271960
CCQQ01000176
Gammaproteobacteria
Escherichia coli [CCQQ]
5912
5986
+
Gly
TCC
[ENA]
¡û
>W141272181
CCQT01000115
Gammaproteobacteria
Escherichia coli [CCQT]
2618
2544
-
Gly
TCC
[ENA]
¡û
>W141272566
CCQY01000110
Gammaproteobacteria
Escherichia coli [CCQY]
3136
3062
-
Gly
TCC
[ENA]
¡û
>WENV183785951
PPYF01299351
[PPYF] human gut metagenome; stool from patient with Crohn's disease
438
512
+
Gly
TCC
[ENA]
¢þ
>C181149665
CP027325
Gammaproteobacteria
Escherichia coli 2013C-4830 [CP027325]
688574
688500
-
Gly
TCC
-
¡û
>C181150863
CP027363
Gammaproteobacteria
Escherichia coli 88-3001 [CP027363]
1400329
1400255
-
Gly
TCC
-
¡û
>W141550439
JHNL01000169
Gammaproteobacteria
Escherichia coli O55:H7 str. 06-3555 [JHNL]
1647
1721
+
Gly
TCC
[ENA]
¡û
>W1910000907
AOTA01000001
Gammaproteobacteria
Escherichia coli O55:H7 str. TB182A [AOTA]
316444
316518
+
Gly
TCC
[ENA]
¡û
>W1910001765
ASAO01000012
Gammaproteobacteria
Escherichia coli O55:H7 str. USDA 5905 [ASAO]
9885
9811
-
Gly
TCC
[ENA]
¡û
>W1910001807
ASAO01000029
Gammaproteobacteria
Escherichia coli O55:H7 str. USDA 5905 [ASAO]
8929
9003
+
Gly
TCC
[ENA]
¡û
>W1910077394
BFKS01000034
Gammaproteobacteria
Escherichia coli HH-P022 [BFKS]
4417
4491
+
Gly
TCC
[ENA]
¡û
>W1910106288
BFZX01000183
Gammaproteobacteria
Escherichia coli KS-P013 [BFZX]
1563
1637
+
Gly
TCC
[ENA]
¡û
>W1910107656
BGAO01000219
Gammaproteobacteria
Escherichia coli KS-P035 [BGAO]
3016
3090
+
Gly
TCC
[ENA]
¡û
>W1910108467
BGAY01000212
Gammaproteobacteria
Escherichia coli KS-P052 [BGAY]
3018
3092
+
Gly
TCC
[ENA]
¡û
>W1910108706
BGBB01000223
Gammaproteobacteria
Escherichia coli KS-P056 [BGBB]
3016
3090
+
Gly
TCC
[ENA]
¡û
>W1910109524
BGBL01000113
Gammaproteobacteria
Escherichia coli KS-P071 [BGBL]
5102
5176
+
Gly
TCC
[ENA]
¡û
>W1910122743
BGIB01000098
Gammaproteobacteria
Escherichia coli SI-P002 [BGIB]
991
917
-
Gly
TCC
[ENA]
¡û
>W1910132337
BIAR01000041
Gammaproteobacteria
Escherichia coli 39-1BK [BIAR]
1807
1881
+
Gly
TCC
[ENA]
¡û
>PHG14101496
JQ347801
unclassified bacterial viruses
Escherichia phage JLK-2012 DEC5E (JQ347801)
23561
23635
+
Gly
TCC
[ENA]
¡û
>W1910944659
NJJG01000087
Gammaproteobacteria
Escherichia coli MOD1-EC906 [NJJG]
2426
2352
-
Gly
TCC
[ENA]
¡û
>W1910956209
NJSL01000123
Gammaproteobacteria
Escherichia coli MOD1-EC2578 [NJSL]
1120
1194
+
Gly
TCC
[ENA]
¡û
>W1910970066
NJZL01000067
Gammaproteobacteria
Escherichia coli MOD1-EC1576 [NJZL]
2291
2365
+
Gly
TCC
[ENA]
¡û
>W1910970078
NJZL01000111
Gammaproteobacteria
Escherichia coli MOD1-EC1576 [NJZL]
663
737
+
Gly
TCC
[ENA]
¡û
>W1910970212
NJZN01000063
Gammaproteobacteria
Escherichia coli MOD1-EC1566 [NJZN]
949
875
-
Gly
TCC
[ENA]
¡û
>W1910972483
NKDG01000085
Gammaproteobacteria
Escherichia coli MOD1-EC907 [NKDG]
2426
2352
-
Gly
TCC
[ENA]
¡û
>W1910974778
NKEL01000138
Gammaproteobacteria
Escherichia coli MOD1-EC416 [NKEL]
1481
1555
+
Gly
TCC
[ENA]
¡û
>W1910975015
NKEO01000124
Gammaproteobacteria
Escherichia coli MOD1-EC404 [NKEO]
1481
1555
+
Gly
TCC
[ENA]
¡û
>W1911056734
NMHZ01000144
Gammaproteobacteria
Escherichia coli MOD1-EC6408 [NMHZ]
823
897
+
Gly
TCC
[ENA]
¡û
>W1911057251
NMIG01000203
Gammaproteobacteria
Escherichia coli MOD1-EC6382 [NMIG]
194
120
-
Gly
TCC
[ENA]
¡û
>W1911132095
NOSR01000119
Gammaproteobacteria
Escherichia coli MOD1-EC6757 [NOSR]
498
424
-
Gly
TCC
[ENA]
¡û
>W1810748102
QOXW01000119
Gammaproteobacteria
Escherichia coli MOD1-ECOR37 [QOXW]
1720
1646
-
Gly
TCC
[ENA]
¡û
>W1510027862
CCBY01000287
Gammaproteobacteria
Escherichia coli [CCBY]
1057
983
-
Gly
TCC
[ENA]
¡û
>W1510028293
CCCD01000280
Gammaproteobacteria
Escherichia coli [CCCD]
2950
3024
+
Gly
TCC
[ENA]
¡û
>W1510028332
CCCD01002253
Gammaproteobacteria
Escherichia coli [CCCD]
214
140
-
Gly
TCC
[ENA]
¡û
>W1510028473
CCCF01000213
Gammaproteobacteria
Escherichia coli [CCCF]
2935
3009
+
Gly
TCC
[ENA]
¡û
>W1510029055
CCCK01000239
Gammaproteobacteria
Escherichia coli [CCCK]
548
474
-
Gly
TCC
[ENA]
¡û
>W1510029097
CCCK01002052
Gammaproteobacteria
Escherichia coli [CCCK]
321
247
-
Gly
TCC
[ENA]
¡û
>W1510078581
CDQU01000193
Gammaproteobacteria
Escherichia coli B7C5 [CDQU]
367
293
-
Gly
TCC
[ENA]
¡û
>W1510078782
CDQW01000231
Gammaproteobacteria
Escherichia coli E8C1 [CDQW]
2942
3016
+
Gly
TCC
[ENA]
¡û
>W1510078986
CDQY01000266
Gammaproteobacteria
Escherichia coli 2d8A [CDQY]
2967
3041
+
Gly
TCC
[ENA]
¡û
>W1510079165
CDRA01000216
Gammaproteobacteria
Escherichia coli 4e8A [CDRA]
4446
4372
-
Gly
TCC
[ENA]
¡û
>W1510080310
CDRO01000289
Gammaproteobacteria
Escherichia coli 57A_A7 [CDRO]
2950
3024
+
Gly
TCC
[ENA]
¡û
>W1510080356
CDRO01002271
Gammaproteobacteria
Escherichia coli 57A_A7 [CDRO]
214
140
-
Gly
TCC
[ENA]
¡û
>W1510080552
CDRQ01000198
Gammaproteobacteria
Escherichia coli 57A_A8 [CDRQ]
6432
6506
+
Gly
TCC
[ENA]
¡û
>W1510158033
CGNN01000023
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi E00-7878 [CGNN]
34678
34604
-
Gly
TCC
[ENA]
¡û
>W1510158730
CGNX01000021
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi E99-4879 [CGNX]
36961
37035
+
Gly
TCC
[ENA]
¡û
>C10106097
CP001846
Gammaproteobacteria
Escherichia coli O55:H7 str. CB9615 [CP001846]
317799
317873
+
Gly
TCC
[Ensembl]
¡û
>W1510727754
CYAE01000050
Gammaproteobacteria
Escherichia coli 100554_aEPEC [CYAE]
2471
2397
-
Gly
TCC
[ENA]
¡û
>W1510728009
CYAH01000045
Gammaproteobacteria
Escherichia coli 500618_aEPEC [CYAH]
2471
2397
-
Gly
TCC
[ENA]
¡û
>W1510728360
CYAL01000109
Gammaproteobacteria
Escherichia coli 402248_aEPEC [CYAL]
1398
1324
-
Gly
TCC
[ENA]
¡û
>W1510729220
CYAV01000106
Gammaproteobacteria
Escherichia coli 503225_aEPEC [CYAV]
771
697
-
Gly
TCC
[ENA]
¡û
>W1510729484
CYAY01000082
Gammaproteobacteria
Escherichia coli 300086_aEPEC [CYAY]
6259
6333
+
Gly
TCC
[ENA]
¡û
>W1510730430
CYBJ01000050
Gammaproteobacteria
Escherichia coli 200758_aEPEC [CYBJ]
13410
13484
+
Gly
TCC
[ENA]
¡û
>W1510731845
CYCA01000115
Gammaproteobacteria
Escherichia coli 403726_aEPEC [CYCA]
1860
1786
-
Gly
TCC
[ENA]
¡û
>W1510732434
CYCH01000056
Gammaproteobacteria
Escherichia coli 702745_aEPEC [CYCH]
15048
15122
+
Gly
TCC
[ENA]
¡û
>W1510732856
CYCM01000087
Gammaproteobacteria
Escherichia coli 102366_aEPEC [CYCM]
4628
4702
+
Gly
TCC
[ENA]
¡û
>W1510733175
CYCQ01000083
Gammaproteobacteria
Escherichia coli 702890_aEPEC [CYCQ]
4578
4652
+
Gly
TCC
[ENA]
¡û
>W1510733530
CYCU01000118
Gammaproteobacteria
Escherichia coli 201488_aEPEC [CYCU]
2382
2456
+
Gly
TCC
[ENA]
¡û
>W1510733785
CYCX01000120
Gammaproteobacteria
Escherichia coli 201589_aEPEC [CYCX]
2287
2361
+
Gly
TCC
[ENA]
¡û
>W1510734374
CYDE01000060
Gammaproteobacteria
Escherichia coli 500989 [CYDE]
13769
13843
+
Gly
TCC
[ENA]
¡û
>W1510736363
CYEO01000109
Gammaproteobacteria
Escherichia coli 703753 [CYEO]
2276
2350
+
Gly
TCC
[ENA]
¡û
>W1510737601
CYFE01000101
Gammaproteobacteria
Escherichia coli 402794 [CYFE]
778
704
-
Gly
TCC
[ENA]
¡û
>W1510738300
CYFN01000078
Gammaproteobacteria
Escherichia coli 700149 [CYFN]
14028
14102
+
Gly
TCC
[ENA]
¡û
>W1510738793
CYFT01000129
Gammaproteobacteria
Escherichia coli 402617 [CYFT]
1681
1607
-
Gly
TCC
[ENA]
¡û
>W1510738959
CYFV01000096
Gammaproteobacteria
Escherichia coli G400871 [CYFV]
1267
1193
-
Gly
TCC
[ENA]
¡û
>W1510740583
CYGQ01000046
Gammaproteobacteria
Escherichia coli 100446 [CYGQ]
15027
15101
+
Gly
TCC
[ENA]
¡û
>W1510740755
CYGS01000072
Gammaproteobacteria
Escherichia coli 200708_aEPEC [CYGS]
9487
9561
+
Gly
TCC
[ENA]
¡û
>W1511429654
JUDO01000247
Gammaproteobacteria
Escherichia coli CVM N33552PS [JUDO]
717
643
-
Gly
TCC
[ENA]
¡û
>W11148779
AEUA01000128
Gammaproteobacteria
Escherichia coli O55:H7 str. 3256-97 [AEUA]
3367
3441
+
Gly
TCC
[ENA]
¡û
>W11148867
AEUB01000101
Gammaproteobacteria
Escherichia coli O55:H7 str. USDA 5905 [AEUB]
3293
3367
+
Gly
TCC
[ENA]
¡û
>W1511630044
LDCR01000090
Gammaproteobacteria
Escherichia coli CFSAN026818 [LDCR]
4139
4213
+
Gly
TCC
[ENA]
¡û
>C121005997
CP003109
Gammaproteobacteria
Escherichia coli O55:H7 str. RM12579 [CP003109]
316445
316519
+
Gly
TCC
[Ensembl]
¡û
>C161049971
CP013029
Gammaproteobacteria
Escherichia coli 2012C-4227 [CP013029]
4490793
4490719
-
Gly
TCC
-
¡û
>C161085221
CP015229
Gammaproteobacteria
Escherichia coli 06-00048 [CP015229]
2620142
2620068
-
Gly
TCC
[Ensembl]
¡û
>C161085499
CP015241
Gammaproteobacteria
Escherichia coli 2013C-4465 [CP015241]
3276670
3276744
+
Gly
TCC
-
¡û
>W121050293
AIFR01000002
Gammaproteobacteria
Escherichia coli DEC5B [AIFR]
91399
91473
+
Gly
TCC
[ENA]
¡û
>W121050434
AIFS01000035
Gammaproteobacteria
Escherichia coli DEC5C [AIFS]
3591
3517
-
Gly
TCC
[ENA]
¡û
>W121050484
AIFT01000006
Gammaproteobacteria
Escherichia coli DEC5D [AIFT]
1294
1368
+
Gly
TCC
[ENA]
¡û
>W1610754570
LNFT01000041
Gammaproteobacteria
Escherichia coli [LNFT]
1894
1820
-
Gly
TCC
[ENA]
¡û
>W1610788152
LOGX01000079
Gammaproteobacteria
Escherichia coli [LOGX]
2491
2417
-
Gly
TCC
[ENA]
¡û
>W1610789981
LOIG01000088
Gammaproteobacteria
Escherichia coli [LOIG]
3082
3008
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK