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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338295 (53 seq.)
>W1711183544
LWLC01000027
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
33895
33823
-
Cys
GCA
[ENA]
¡û
>W1711724933
MTQP01000055
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
190401
190329
-
Cys
GCA
[ENA]
¡û
>W1711766498
MUYM01000006
Actinomycetota
Lentzea kentuckyensis [MUYM]
143408
143480
+
Cys
GCA
[ENA]
¡û
>C171033872
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
4429903
4429975
+
Cys
GCA
-
¡û
>C171045478
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
5224016
5224088
+
Cys
GCA
-
¡û
>C171045525
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
5283186
5283258
+
Cys
GCA
-
¡û
>C171051002
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
5431360
5431432
+
Cys
GCA
-
¡û
>W141000313
ACQP01000130
Actinomycetota
Kutzneria sp. 744 [ACQP]
31189
31117
-
Cys
GCA
[ENA]
¡û
>WENV181191848
OEPS010245964
[OEPS] soil metagenome; soil
108
180
+
Cys
GCA
[ENA]
¢þ
>WENV183749276
PPFU01145766
[PPFU] hypolithon metagenome; Antarctic Hypolithon
167
95
-
Cys
GCA
[ENA]
¢þ
>WENV170024319
BCQL01042158
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
557
485
-
Cys
GCA
[ENA]
¢þ
>C181067259
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
4669868
4669940
+
Cys
GCA
-
¡û
>C181081538
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
2247524
2247452
-
Cys
GCA
-
¡û
>C191064809
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
2305743
2305671
-
Cys
GCA
-
¡û
>C191130610
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
2089217
2089289
+
Cys
GCA
-
¡û
>W09108149
ABTA01000028
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
63377
63449
+
Cys
GCA
[ENA]
¡û
>W09109736
ABUM01000008
Actinomycetota
Saccharomonospora viridis DSM 43017 [ABUM]
153313
153385
+
Cys
GCA
[ENA]
¡û
>W141756333
JNXC01000044
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
3592
3664
+
Cys
GCA
[ENA]
¡û
>W141757639
JNYA01002177
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
60
132
+
Cys
GCA
[ENA]
¡û
>W141757971
JNYH01000217
Actinomycetota
Kutzneria albida [JNYH]
5220
5148
-
Cys
GCA
[ENA]
¡û
>W141758402
JNYO01000061
Actinomycetota
Saccharothrix syringae [JNYO]
35766
35694
-
Cys
GCA
[ENA]
¡û
>W141758725
JNYU01001267
Actinomycetota
Umezawaea tangerina [JNYU]
56
128
+
Cys
GCA
[ENA]
¡û
>W141766510
JOEA01000012
Actinomycetota
Lentzea albidocapillata [JOEA]
4102
4174
+
Cys
GCA
[ENA]
¡û
>W141768602
JOFI01000005
Actinomycetota
Lentzea aerocolonigenes [JOFI]
110771
110699
-
Cys
GCA
[ENA]
¡û
>W141771491
JOHE01003209
Actinomycetota
Lentzea aerocolonigenes [JOHE]
83
11
-
Cys
GCA
[ENA]
¡û
>C09100649
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
2234262
2234190
-
Cys
GCA
[Ensembl]
¡û
>W1810364425
PVTF01000006
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
346780
346708
-
Cys
GCA
[ENA]
¡û
>W1810393113
PYAX01000020
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
71455
71383
-
Cys
GCA
[ENA]
¡û
>W1810592197
QFWW01000006
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
272997
272925
-
Cys
GCA
[ENA]
¡û
>W1810597162
QGHB01000005
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
413158
413230
+
Cys
GCA
[ENA]
¡û
>W1810697033
QLTT01000013
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
69339
69411
+
Cys
GCA
[ENA]
¡û
>W1810763037
QQAU01000008
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
197299
197371
+
Cys
GCA
[ENA]
¡û
>W1810885798
QUNO01000035
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
62961
63033
+
Cys
GCA
[ENA]
¡û
>C151017645
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
2521574
2521502
-
Cys
GCA
[Ensembl]
¡û
>C151105083
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
3364273
3364201
-
Cys
GCA
-
¡û
>W1510013133
BBOJ01000009
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
260114
260186
+
Cys
GCA
[ENA]
¡û
>C10112966
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
1534302
1534230
-
Cys
GCA
[Ensembl]
¡û
>W1511360274
JRZE01000006
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
305896
305824
-
Cys
GCA
[ENA]
¡û
>W1511697448
LGDY01000093
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
87114
87042
-
Cys
GCA
[ENA]
¡û
>W1511697775
LGED01000277
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
12632
12560
-
Cys
GCA
[ENA]
¡û
>W121024689
AHBX01000047
Actinomycetota
Saccharomonospora azurea SZMC 14600 [AHBX]
8408
8480
+
Cys
GCA
[ENA]
¡û
>C131019827
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
3041877
3041805
-
Cys
GCA
[Ensembl]
¡û
>W1710515804
FNCC01000017
Actinomycetota
Lentzea fradiae [FNCC]
27292
27364
+
Cys
GCA
[ENA]
¡û
>W1710518170
FNDV01000010
Actinomycetota
Actinokineospora alba album [FNDV]
129949
129877
-
Cys
GCA
[ENA]
¡û
>W1710519494
FNET01000023
Actinomycetota
Lentzea albidocapillata violacea [FNET]
112079
112007
-
Cys
GCA
[ENA]
¡û
>W1710524693
FNIX01000019
Actinomycetota
Lentzea jiangxiensis [FNIX]
111311
111239
-
Cys
GCA
[ENA]
¡û
>W1710524885
FNJB01000010
Actinomycetota
Actinokineospora alba album [FNJB]
129902
129830
-
Cys
GCA
[ENA]
¡û
>W1710550938
FOFR01000017
Actinomycetota
Lentzea xinjiangensis [FOFR]
140256
140328
+
Cys
GCA
[ENA]
¡û
>W1710551026
FOFT01000007
Actinomycetota
Lentzea flaviverrucosa [FOFT]
199453
199525
+
Cys
GCA
[ENA]
¡û
>W1710551122
FOFV01000003
Actinomycetota
Lentzea albida [FOFV]
224420
224348
-
Cys
GCA
[ENA]
¡û
>W1710572470
FOWS01000001
Actinomycetota
Saccharomonospora viridis [FOWS]
1033878
1033950
+
Cys
GCA
[ENA]
¡û
>W1710574748
FOYL01000008
Actinomycetota
Lentzea waywayandensis [FOYL]
169492
169564
+
Cys
GCA
[ENA]
¡û
>W1710606856
FWYC01000018
Actinomycetota
Lentzea albidocapillata [FWYC]
4288
4360
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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