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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338313 (123 seq.)
>W1710895997
LNHF01000002
Gammaproteobacteria
Klebsiella pneumoniae [LNHF]
27954
27880
-
Gly
TCC
[ENA]
¡û
>C171018682
CP012745
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae TGH13 [CP012745]
2071618
2071692
+
Gly
TCC
-
¡û
>C171126672
CP021939
Gammaproteobacteria
Klebsiella pneumoniae AR_0145 [CP021939]
4029642
4029568
-
Gly
TCC
-
¡û
>C172000172
CP020053
Gammaproteobacteria
Enterobacter cloacae complex sp. AR_0065 [CP020053]
1266337
1266263
-
Gly
TCC
-
¡û
>W141043646
AMGJ01000016
Gammaproteobacteria
Enterobacter hormaechei subsp. cloacae 08XA1 [AMGJ]
8490
8416
-
Gly
TCC
[ENA]
¡û
>WENV181187488
OENY01027190
[OENY] human gut metagenome; human gut
119
193
+
Gly
TCC
[ENA]
¢þ
>WENV181798916
OGRX01001468
[OGRX] human gut metagenome; fecal sample 2 from infant 8
2637
2563
-
Gly
TCC
[ENA]
¢þ
>WENV181805439
OGSI01001536
[OGSI] human gut metagenome; fecal sample 4 from infant 8
60
134
+
Gly
TCC
[ENA]
¢þ
>WENV181805860
OGSJ01000879
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
211
137
-
Gly
TCC
[ENA]
¢þ
>WENV181807133
OGSN01003736
[OGSN] human gut metagenome; fecal sample 7 from infant 8
1582
1508
-
Gly
TCC
[ENA]
¢þ
>WENV181811440
OGSY01002248
[OGSY] human gut metagenome; fecal sample 5 from infant 8
60
134
+
Gly
TCC
[ENA]
¢þ
>WENV181811774
OGSZ01001787
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
60
134
+
Gly
TCC
[ENA]
¢þ
>WENV181911991
OGYD01009197
[OGYD] human gut metagenome; faeces
3396
3322
-
Gly
TCC
[ENA]
¢þ
>WENV182808238
OJWD01001532
[OJWD] human gut metagenome; human gut
1145
1219
+
Gly
TCC
[ENA]
¢þ
>WENV182809342
OJWP01000019
[OJWP] human gut metagenome; human gut
68082
68156
+
Gly
TCC
[ENA]
¢þ
>WENV182822324
OKBG01000159
[OKBG] human gut metagenome; human gut
327
253
-
Gly
TCC
[ENA]
¢þ
>WENV182822562
OKBL01000033
[OKBL] human gut metagenome; human gut
327
253
-
Gly
TCC
[ENA]
¢þ
>WENV182825197
OKCH01000009
[OKCH] human gut metagenome; human gut
135
61
-
Gly
TCC
[ENA]
¢þ
>WENV182829861
OKDT01000458
[OKDT] human gut metagenome; human gut
5657
5731
+
Gly
TCC
[ENA]
¢þ
>WENV182845820
OKJG01003700
[OKJG] human gut metagenome; human gut
20
94
+
Gly
TCC
[ENA]
¢þ
>WENV182856525
OKNO01000726
[OKNO] human gut metagenome; human gut
1099
1025
-
Gly
TCC
[ENA]
¢þ
>WENV183088091
OLJR01000907
[OLJR] human gut metagenome; human gut
2628
2702
+
Gly
TCC
[ENA]
¢þ
>WENV170005166
AKZA01002581
[AKZA] insect gut metagenome;
4861
4787
-
Gly
TCC
[ENA]
¢þ
>C181129174
CP026216
Gammaproteobacteria
Citrobacter sp. CFNIH10 [CP026216]
4385001
4384927
-
Gly
TCC
-
¡û
>C181187585
CP030076
Gammaproteobacteria
Enterobacter hormaechei 20710 [CP030076]
892130
892056
-
Gly
TCC
-
¡û
>C181202423
CP031571
Gammaproteobacteria
Enterobacter hormaechei N1 [CP031571]
1698766
1698840
+
Gly
TCC
-
¡û
>C191016921
CP019889
Gammaproteobacteria
Enterobacter hormaechei FRM [CP019889]
2168096
2168170
+
Gly
TCC
-
¡û
>C191149956
CP036310
Gammaproteobacteria
Enterobacter hormaechei WCHEH090011 [CP036310]
3408189
3408115
-
Gly
TCC
-
¡û
>W142000534
AYJA01000006
Gammaproteobacteria
Enterobacter roggenkampii MGH 34 [AYJA]
649321
649395
+
Gly
TCC
[ENA]
¡û
>W142000748
JCLF01000004
Gammaproteobacteria
Enterobacter hormaechei BIDMC 8 [JCLF]
52180
52106
-
Gly
TCC
[ENA]
¡û
>W142001036
JMZV01000010
Gammaproteobacteria
Enterobacter hormaechei CHS 78 [JMZV]
254160
254234
+
Gly
TCC
[ENA]
¡û
>W1940000019
MKEQ01000001
Gammaproteobacteria
Enterobacter hormaechei ATCC 49162 [MKEQ]
12849
12923
+
Gly
TCC
[ENA]
¡û
>W1910941194
NJCO01000049
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii HB_Z_2180 [NJCO]
430
356
-
Gly
TCC
[ENA]
¡û
>W1911076641
NMVR01000002
Gammaproteobacteria
Enterobacter hormaechei HBY [NMVR]
9316
9242
-
Gly
TCC
[ENA]
¡û
>W1911504436
OETD01000052
Gammaproteobacteria
Enterobacter hormaechei [OETD]
6487
6561
+
Gly
TCC
[ENA]
¡û
>W1911582656
PHNZ01000005
Gammaproteobacteria
Enterobacter hormaechei ST93 [PHNZ]
246378
246452
+
Gly
TCC
[ENA]
¡û
>W1911668294
QFLX01000031
Gammaproteobacteria
Enterobacter cloacae complex sp. 2DZ2F20B [QFLX]
53554
53628
+
Gly
TCC
[ENA]
¡û
>W1810695659
QLNR01000041
Gammaproteobacteria
Enterobacter hormaechei 20712 [QLNR]
14976
15050
+
Gly
TCC
[ENA]
¡û
>W1830003474
PJRB01000042
Gammaproteobacteria
Escherichia coli Lys53 [PJRB]
182576
182502
-
Gly
TCC
[ENA]
¡û
>W1830003475
PJRC01000106
Gammaproteobacteria
Escherichia coli Lys52 [PJRC]
262984
263058
+
Gly
TCC
[ENA]
¡û
>W1830003476
PJRD01000060
Gammaproteobacteria
Escherichia coli Lys45 [PJRD]
136662
136736
+
Gly
TCC
[ENA]
¡û
>W1830003477
PJRE01000080
Gammaproteobacteria
Escherichia coli Lys36 [PJRE]
182574
182500
-
Gly
TCC
[ENA]
¡û
>W1830003478
PJRF01000074
Gammaproteobacteria
Escherichia coli Lys35 [PJRF]
263030
263104
+
Gly
TCC
[ENA]
¡û
>W1830003479
PJRG01000065
Gammaproteobacteria
Escherichia coli Lys34 [PJRG]
182576
182502
-
Gly
TCC
[ENA]
¡û
>W1830003480
PJRH01000093
Gammaproteobacteria
Escherichia coli Lys28 [PJRH]
262457
262531
+
Gly
TCC
[ENA]
¡û
>W1830003481
PJRI01000080
Gammaproteobacteria
Escherichia coli Lys24 [PJRI]
182576
182502
-
Gly
TCC
[ENA]
¡û
>W1860011883
PUQG01000003
Gammaproteobacteria
Enterobacter hormaechei GER_MD08_1505_Ecl_089 [PUQG]
27644
27570
-
Gly
TCC
[ENA]
¡û
>W1520001164
JSBO01000003
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae CCBH10892 [JSBO]
346295
346221
-
Gly
TCC
[ENA]
¡û
>W1520001281
JVYD01000166
Gammaproteobacteria
Enterobacter hormaechei 1222_ECLO [JVYD]
4248
4322
+
Gly
TCC
[ENA]
¡û
>W1520001399
JZKQ01000025
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL6 [JZKQ]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001400
JZKR01000028
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL7 [JZKR]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001401
JZKS01000022
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL8 [JZKS]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001402
JZKV01000015
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL11 [JZKV]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001403
JZKX01000026
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL13 [JZKX]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001404
JZKZ01000028
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL15 [JZKZ]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001405
JZLA01000022
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL16 [JZLA]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001406
JZLC01000028
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL18 [JZLC]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001407
JZLD01000027
Gammaproteobacteria
Enterobacter hormaechei CIDEIMsCOL19 [JZLD]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001418
JZXU01000030
Gammaproteobacteria
Enterobacter hormaechei 44541 [JZXU]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001419
JZXW01000029
Gammaproteobacteria
Enterobacter hormaechei 44524 [JZXW]
357
283
-
Gly
TCC
[ENA]
¡û
>W1520001420
JZXX01000031
Gammaproteobacteria
Enterobacter hormaechei 44517 [JZXX]
357
283
-
Gly
TCC
[ENA]
¡û
>W11700018
AFHR01000051
Gammaproteobacteria
Enterobacter hormaechei ATCC 49162 [AFHR]
72
1
-
Gly
TCC
[ENA]
¡û
>C162000077
CP014070
Gammaproteobacteria
Citrobacter amalonaticus FDAARGOS_165 [CP014070]
4187300
4187226
-
Gly
TCC
-
¡û
>C162000097
CP015227
Gammaproteobacteria
Enterobacter sp. ODB01 [CP015227]
3905096
3905022
-
Gly
TCC
-
¡û
>W1610756401
LNHF01000002
Gammaproteobacteria
Klebsiella pneumoniae [LNHF]
27954
27880
-
Gly
TCC
[ENA]
¡û
>W1620000914
FJWR01000043
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJWR]
3092
3166
+
Gly
TCC
[ENA]
¡û
>W1620000915
FJXB01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXB]
100325
100399
+
Gly
TCC
[ENA]
¡û
>W1620000916
FJXG01000021
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXG]
86111
86185
+
Gly
TCC
[ENA]
¡û
>W1620000917
FJYD01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYD]
812
738
-
Gly
TCC
[ENA]
¡û
>W1620000918
FJYE01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYE]
54925
54851
-
Gly
TCC
[ENA]
¡û
>W1620000919
FJYW01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYW]
331589
331515
-
Gly
TCC
[ENA]
¡û
>W1620000920
FJZQ01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZQ]
100327
100401
+
Gly
TCC
[ENA]
¡û
>W1620000924
FKBO01000010
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKBO]
54960
54886
-
Gly
TCC
[ENA]
¡û
>W1620000929
FKEJ01000014
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEJ]
53257
53331
+
Gly
TCC
[ENA]
¡û
>W1620000930
FKEV01000033
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEV]
8081
8155
+
Gly
TCC
[ENA]
¡û
>W1620000932
FKGS01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGS]
323386
323312
-
Gly
TCC
[ENA]
¡û
>W1620000933
FKHD01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKHD]
150057
150131
+
Gly
TCC
[ENA]
¡û
>W1620000934
FKHN01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKHN]
270701
270775
+
Gly
TCC
[ENA]
¡û
>W1620001539
LPOL01000027
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPOL]
73799
73873
+
Gly
TCC
[ENA]
¡û
>W1620001541
LPPC01000023
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPC]
54781
54707
-
Gly
TCC
[ENA]
¡û
>W1620001542
LPPF01000003
Gammaproteobacteria
Enterobacter roggenkampii complex sp. SMART_763 [LPPF]
81604
81678
+
Gly
TCC
[ENA]
¡û
>W1620001543
LPPI01000063
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPI]
364
290
-
Gly
TCC
[ENA]
¡û
>W1620001544
LPPQ01000056
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPQ]
652642
652716
+
Gly
TCC
[ENA]
¡û
>W1620001545
LPPT01000012
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPPT]
1365
1291
-
Gly
TCC
[ENA]
¡û
>W1620001546
LPPV01000004
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPPV]
77427
77501
+
Gly
TCC
[ENA]
¡û
>W1620001547
LPPW01000054
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPW]
56416
56342
-
Gly
TCC
[ENA]
¡û
>W1620001548
LPQU01000008
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPQU]
5517
5443
-
Gly
TCC
[ENA]
¡û
>W1620001610
LRIV01000001
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRIV]
640093
640167
+
Gly
TCC
[ENA]
¡û
>W1620001612
LRIZ01000056
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRIZ]
28604
28530
-
Gly
TCC
[ENA]
¡û
>W1720000879
FJWR01000043
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJWR]
3092
3166
+
Gly
TCC
[ENA]
¡û
>W1720000880
FJXB01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXB]
100325
100399
+
Gly
TCC
[ENA]
¡û
>W1720000881
FJXG01000021
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJXG]
86111
86185
+
Gly
TCC
[ENA]
¡û
>W1720000882
FJYD01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYD]
812
738
-
Gly
TCC
[ENA]
¡û
>W1720000883
FJYE01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYE]
54925
54851
-
Gly
TCC
[ENA]
¡û
>W1720000884
FJYW01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJYW]
331589
331515
-
Gly
TCC
[ENA]
¡û
>W1720000885
FJZQ01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZQ]
100327
100401
+
Gly
TCC
[ENA]
¡û
>W1720000886
FKAI01000036
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAI]
6567
6641
+
Gly
TCC
[ENA]
¡û
>W1720000887
FKAK01000029
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAK]
186
112
-
Gly
TCC
[ENA]
¡û
>W1720000888
FKAL01000025
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKAL]
188
114
-
Gly
TCC
[ENA]
¡û
>W1720000889
FKBO01000010
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKBO]
54960
54886
-
Gly
TCC
[ENA]
¡û
>W1720000894
FKEJ01000014
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEJ]
53257
53331
+
Gly
TCC
[ENA]
¡û
>W1720000895
FKEV01000033
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEV]
8081
8155
+
Gly
TCC
[ENA]
¡û
>W1720000896
FKGD01000036
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGD]
188
114
-
Gly
TCC
[ENA]
¡û
>W1720000897
FKGS01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGS]
323386
323312
-
Gly
TCC
[ENA]
¡û
>W1720000898
FKHD01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKHD]
150057
150131
+
Gly
TCC
[ENA]
¡û
>W1720000899
FKHN01000001
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKHN]
270701
270775
+
Gly
TCC
[ENA]
¡û
>W1720001952
LPOL01000027
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPOL]
73799
73873
+
Gly
TCC
[ENA]
¡û
>W1720001954
LPPC01000023
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPC]
54781
54707
-
Gly
TCC
[ENA]
¡û
>W1720001955
LPPF01000003
Gammaproteobacteria
Enterobacter roggenkampii complex sp. SMART_763 [LPPF]
81604
81678
+
Gly
TCC
[ENA]
¡û
>W1720001956
LPPI01000063
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPI]
364
290
-
Gly
TCC
[ENA]
¡û
>W1720001957
LPPQ01000056
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPQ]
652642
652716
+
Gly
TCC
[ENA]
¡û
>W1720001958
LPPT01000012
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPPT]
1365
1291
-
Gly
TCC
[ENA]
¡û
>W1720001959
LPPV01000004
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPPV]
77427
77501
+
Gly
TCC
[ENA]
¡û
>W1720001960
LPPW01000054
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPPW]
56416
56342
-
Gly
TCC
[ENA]
¡û
>W1720001961
LPQU01000008
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LPQU]
5517
5443
-
Gly
TCC
[ENA]
¡û
>W1720002047
LRIV01000001
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRIV]
640093
640167
+
Gly
TCC
[ENA]
¡û
>W1720002049
LRIZ01000056
Gammaproteobacteria
Enterobacter hormaechei subsp. oharae [LRIZ]
28604
28530
-
Gly
TCC
[ENA]
¡û
>W1720003124
MRAA01000005
Gammaproteobacteria
Enterobacter hormaechei cloacae [MRAA]
331427
331353
-
Gly
TCC
[ENA]
¡û
>W1720003125
MRAA01000020
Gammaproteobacteria
Enterobacter hormaechei cloacae [MRAA]
12978
12904
-
Gly
TCC
[ENA]
¡û
>W1720003126
MRAB01000017
Gammaproteobacteria
Enterobacter hormaechei cloacae [MRAB]
12921
12847
-
Gly
TCC
[ENA]
¡û
>W1720003127
MRAB01000025
Gammaproteobacteria
Enterobacter hormaechei cloacae [MRAB]
9354
9428
+
Gly
TCC
[ENA]
¡û
>W1720003186
MTSN01000020
Gammaproteobacteria
Enterobacter hormaechei cloacae [MTSN]
12309
12235
-
Gly
TCC
[ENA]
¡û
>W1720003187
MTSN01000031
Gammaproteobacteria
Enterobacter hormaechei cloacae [MTSN]
28245
28171
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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