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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338330 (24 seq.)
>W1711311440
MARZ01000040
Bacillota
Clostridium perfringens [MARZ]
36245
36171
-
Cys
GCA
[ENA]
¡û
>W1711311483
MARZ01000062
Bacillota
Clostridium perfringens [MARZ]
175397
175471
+
Cys
GCA
[ENA]
¡û
>C171040808
CP015756
Bacillota
Clostridium estertheticum subsp. estertheticum DSM 8809 [CP015756]
125131
125205
+
Cys
GCA
-
¡û
>C171040867
CP015756
Bacillota
Clostridium estertheticum subsp. estertheticum DSM 8809 [CP015756]
3798632
3798558
-
Cys
GCA
-
¡û
>WENV180624669
OCQH01109661
[OCQH] human gut metagenome; human gut
211
285
+
Cys
GCA
[ENA]
¢þ
>WENV180828599
ODKA01014864
[ODKA] human metagenome; G_DNA_Stool
1735
1809
+
Cys
GCA
[ENA]
¢þ
>WENV180870293
ODLN01001221
[ODLN] human metagenome; G_DNA_Stool
18030
17956
-
Cys
GCA
[ENA]
¢þ
>W141088557
AUVG01000020
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
92129
92055
-
Cys
GCA
[ENA]
¡û
>W141088608
AUVG01000096
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
31874
31800
-
Cys
GCA
[ENA]
¡û
>WENV182649149
OJMG01003164
[OJMG] human gut metagenome; feces
10626
10552
-
Cys
GCA
[ENA]
¢þ
>WENV182957535
OKWG01016741
[OKWG] human gut metagenome; human gut
515
441
-
Cys
GCA
[ENA]
¢þ
>WENV170050802
CDZB01043033
[CDZB] gut metagenome; human stools
7730
7656
-
Cys
GCA
[ENA]
¢þ
>C191037271
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
750225
750299
+
Cys
GCA
-
¡û
>C191037317
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
2256451
2256525
+
Cys
GCA
-
¡û
>W1910129064
BHYK01000001
Bacillota
Clostridium tagluense A121 [BHYK]
402
476
+
Cys
GCA
[ENA]
¡û
>W1910129137
BHYK01000025
Bacillota
Clostridium tagluense A121 [BHYK]
1767
1841
+
Cys
GCA
[ENA]
¡û
>C151101499
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
153809
153883
+
Cys
GCA
[Ensembl]
¡û
>C151101538
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2323671
2323597
-
Cys
GCA
[Ensembl]
¡û
>C151102760
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
1860756
1860682
-
Cys
GCA
[Ensembl]
¡û
>C151102771
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
1066691
1066617
-
Cys
GCA
[Ensembl]
¡û
>C161021544
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
3099766
3099692
-
Cys
GCA
-
¡û
>C161021592
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
2483322
2483248
-
Cys
GCA
-
¡û
>W121001706
ADLP01000007
Bacillota
Clostridium perfringens WAL-14572 [ADLP]
249376
249302
-
Cys
GCA
[ENA]
¡û
>W121001742
ADLP01000013
Bacillota
Clostridium perfringens WAL-14572 [ADLP]
35117
35043
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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