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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338352 (34 seq.)
>W1711020827
LQYU01000038
Bacillota
Anoxybacillus flavithermus [LQYU]
1281
1355
+
Gln
TTG
[ENA]
¡û
>W1711116951
LUCT01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
12593
12519
-
Gln
TTG
[ENA]
¡û
>W1711689252
MSDU01000031
Bacillota
Domibacillus antri [MSDU]
585
659
+
Gln
TTG
[ENA]
¡û
>W1711692030
MSFI01000002
Bacillota
Domibacillus epiphyticus SAB 38 [MSFI]
132354
132280
-
Gln
TTG
[ENA]
¡û
>W1711692065
MSFI01000016
Bacillota
Domibacillus epiphyticus SAB 38 [MSFI]
26285
26359
+
Gln
TTG
[ENA]
¡û
>PL171001074
CP015440
Firmicutes
Anoxybacillus amylolyticus DSM 15939 plasmid:pDSM15939_2
64064
64138
+
Gln
TTG
[ENA]
¡û
>C171050285
CP016622
Bacillota
Parageobacillus thermoglucosidasius NCIMB 11955 [CP016622]
3841747
3841673
-
Gln
TTG
-
¡û
>C171053489
CP016916
Bacillota
Parageobacillus thermoglucosidasius TM242 [CP016916]
3841157
3841083
-
Gln
TTG
-
¡û
>C171095509
CP019573
Bacillota
Abyssicoccus albus S31 [CP019573]
418204
418277
+
Gln
TTG
-
¡û
>C171095529
CP019573
Bacillota
Abyssicoccus albus S31 [CP019573]
1479863
1479789
-
Gln
TTG
-
¡û
>WENV181043847
ODXV01001059
[ODXV] human metagenome; G_DNA_Tongue dorsum
1
74
+
Gln
TTG
[ENA]
¢þ
>W141234583
BAWP01000054
Bacillota
Parageobacillus thermoglucosidasius NBRC 107763 [BAWP]
3264
3190
-
Gln
TTG
[ENA]
¡û
>WENV182819885
OKAH01000536
[OKAH] human gut metagenome; human gut
925
998
+
Gln
TTG
[ENA]
¢þ
>W09135306
ACVM01000076
Bacillota
Geobacillus sp. Y4.1MC1 [ACVM]
1214
1288
+
Gln
TTG
[ENA]
¡û
>W1910129763
BHZK01000001
Bacillota
Parageobacillus thermoglucosidasius TG4 [BHZK]
483311
483385
+
Gln
TTG
[ENA]
¡û
>W1810779476
QQOJ01000001
Bacillota
Parageobacillus thermoglucosidasius DSM 2543 [QQOJ]
1204530
1204456
-
Gln
TTG
[ENA]
¡û
>W1810779627
QQOK01000008
Bacillota
Parageobacillus thermoglucosidasius DSM 6285 [QQOK]
1169692
1169618
-
Gln
TTG
[ENA]
¡û
>W1810779726
QQOL01000019
Bacillota
Parageobacillus thermoglucosidasius DSM 21625 [QQOL]
45876
45802
-
Gln
TTG
[ENA]
¡û
>C151039629
CP008903
Bacillota
Geobacillus sp. LC300 [CP008903]
1215827
1215753
-
Gln
TTG
-
¡û
>C151086934
CP011832
Bacillota
Geobacillus sp. 12AMOR1 [CP011832]
2854929
2854855
-
Gln
TTG
[Ensembl]
¡û
>C151097672
CP012712
Bacillota
Parageobacillus thermoglucosidasius DSM 2542 [CP012712]
3841749
3841675
-
Gln
TTG
-
¡û
>W10116280
ADNQ01000052
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [ADNQ]
4024
3950
-
Gln
TTG
[ENA]
¡û
>C11109729
CP002293
Bacillota
Geobacillus sp. Y4.1MC1 [CP002293]
659513
659587
+
Gln
TTG
[Ensembl]
¡û
>C11109818
CP002835
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [CP002835]
667736
667810
+
Gln
TTG
[Ensembl]
¡û
>W11120949
ADNQ01000052
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [ADNQ]
4024
3950
-
Gln
TTG
[ENA]
¡û
>W1511570745
LAKX01000055
Bacillota
Parageobacillus thermoglucosidasius DSM 2542 [LAKX]
3386
3312
-
Gln
TTG
[ENA]
¡û
>W121062580
AJJN01000003
Bacillota
Parageobacillus thermoglucosidasius TNO-09.020 [AJJN]
1822
1896
+
Gln
TTG
[ENA]
¡û
>W1610382803
FHSN01000012
Bacillota
Streptococcus pneumoniae [FHSN]
6106
6179
+
Gln
TTG
[ENA]
¡û
>W1610869115
LQYU01000038
Bacillota
Anoxybacillus flavithermus [LQYU]
1281
1355
+
Gln
TTG
[ENA]
¡û
>W1610928310
LUCT01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
12593
12519
-
Gln
TTG
[ENA]
¡û
>W1710382570
FHSN01000012
Bacillota
Streptococcus pneumoniae [FHSN]
6106
6179
+
Gln
TTG
[ENA]
¡û
>W1710555801
FOJS01000082
Bacillota
Parageobacillus thermantarcticus [FOJS]
1481
1555
+
Gln
TTG
[ENA]
¡û
>W1710600574
FUWO01000004
Bacillota
Globicatella sulfidifaciens DSM 15739 [FUWO]
92
165
+
Gln
TTG
[ENA]
¡û
>W1710600580
FUWO01000013
Bacillota
Globicatella sulfidifaciens DSM 15739 [FUWO]
48
121
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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