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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338353 (41 seq.)
>W1711089373
LSZO01000175
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
14498
14572
+
Lys
TTT
[ENA]
¡û
>W131155972
AQPA01000054
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
51647
51721
+
Lys
TTT
[ENA]
¡û
>W131155989
AQPA01000067
Gammaproteobacteria
Pseudomonas thermotolerans DSM 14292 [AQPA]
138395
138469
+
Lys
TTT
[ENA]
¡û
>W141216312
AZUT01000009
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
13128
13054
-
Lys
TTT
[ENA]
¡û
>W141216335
AZUT01000026
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
51683
51757
+
Lys
TTT
[ENA]
¡û
>W141319181
JBOY01000123
Gammaproteobacteria
Pseudomonas sp. RL [JBOY]
2075
2001
-
Lys
TTT
[ENA]
¡û
>WENV170686383
LFRM01141117
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
819
893
+
Lys
TTT
[ENA]
¢þ
>W1911681669
QJUO01000027
Gammaproteobacteria
Stutzerimonas kirkiae P4C [QJUO]
13195
13269
+
Lys
TTT
[ENA]
¡û
>W1911681673
QJUO01000031
Gammaproteobacteria
Stutzerimonas kirkiae P4C [QJUO]
36516
36442
-
Lys
TTT
[ENA]
¡û
>W1911681724
QJUP01000026
Gammaproteobacteria
Stutzerimonas kirkiae P17C [QJUP]
47490
47416
-
Lys
TTT
[ENA]
¡û
>W1911681727
QJUP01000028
Gammaproteobacteria
Stutzerimonas kirkiae P17C [QJUP]
36516
36442
-
Lys
TTT
[ENA]
¡û
>W1911681737
QJUQ01000001
Gammaproteobacteria
Stutzerimonas kirkiae P28C [QJUQ]
135916
135842
-
Lys
TTT
[ENA]
¡û
>W1911681746
QJUQ01000008
Gammaproteobacteria
Stutzerimonas kirkiae P28C [QJUQ]
125820
125746
-
Lys
TTT
[ENA]
¡û
>W1911681813
QJUR01000007
Gammaproteobacteria
Stutzerimonas kirkiae P30C [QJUR]
116078
116004
-
Lys
TTT
[ENA]
¡û
>W1911681823
QJUR01000016
Gammaproteobacteria
Stutzerimonas kirkiae P30C [QJUR]
93445
93519
+
Lys
TTT
[ENA]
¡û
>C151093938
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1348773
1348699
-
Lys
TTT
-
¡û
>C151093939
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1311055
1310981
-
Lys
TTT
-
¡û
>C151093975
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1645139
1645213
+
Lys
TTT
-
¡û
>C151093979
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
2059866
2059940
+
Lys
TTT
-
¡û
>C151093980
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
2097596
2097670
+
Lys
TTT
-
¡û
>C151094056
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
222408
222334
-
Lys
TTT
-
¡û
>C151094057
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
184678
184604
-
Lys
TTT
-
¡û
>C151094082
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1734630
1734704
+
Lys
TTT
-
¡û
>C151094083
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1772348
1772422
+
Lys
TTT
-
¡û
>C151094141
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1295644
1295570
-
Lys
TTT
-
¡û
>C151094142
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1257899
1257825
-
Lys
TTT
-
¡û
>C151094178
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1800953
1801027
+
Lys
TTT
-
¡û
>C151094179
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1838695
1838769
+
Lys
TTT
-
¡û
>C151094231
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1772658
1772732
+
Lys
TTT
-
¡û
>C151094232
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1810376
1810450
+
Lys
TTT
-
¡û
>C151103622
LN649236
Gammaproteobacteria
Candidatus Portiera aleyrodidarum TV-BCN [LN649236]
220029
219956
-
Lys
TTT
[Ensembl]
¡û
>W1511356327
JRUD01000002
Gammaproteobacteria
Pseudomonas flexibilis ATCC 29606 [JRUD]
325252
325178
-
Lys
TTT
[ENA]
¡û
>W1511393305
JTAK01000002
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [JTAK]
123007
122933
-
Lys
TTT
[ENA]
¡û
>C161041384
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
933672
933598
-
Lys
TTT
[Ensembl]
¡û
>C161041385
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
895930
895856
-
Lys
TTT
[Ensembl]
¡û
>W1610047014
BBCY01000602
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
172
246
+
Lys
TTT
[ENA]
¡û
>C131013555
CP004358
Gammaproteobacteria
Candidatus Portiera aleyrodidarum TV [CP004358]
219816
219743
-
Lys
TTT
[Ensembl]
¡û
>W1610923751
LSZO01000175
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
14498
14572
+
Lys
TTT
[ENA]
¡û
>W1710043619
BBCY01000602
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
172
246
+
Lys
TTT
[ENA]
¡û
>W1710506515
FMUP01000001
Gammaproteobacteria
Pseudomonas flexibilis [FMUP]
757167
757241
+
Lys
TTT
[ENA]
¡û
>W1710595664
FTMC01000001
Gammaproteobacteria
Pseudomonas flexibilis [FTMC]
324758
324684
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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