This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338374 (27 seq.)
>WENV180015893
FSTQ01000095
[FSTQ] metagenome; soil
4002
4073
+
Val
GAC
[ENA]
¢þ
>WENV180029078
FTJI01020694
[FTJI] metagenome; soil
477
548
+
Val
GAC
[ENA]
¢þ
>WENV180034600
FTKR01021051
[FTKR] metagenome; soil
477
548
+
Val
GAC
[ENA]
¢þ
>WENV180253047
OBEQ010501295
[OBEQ] groundwater metagenome; groundwater
81
7
-
Val
GAC
[ENA]
¢þ
>W141073089
ASRX01000010
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
14149
14077
-
Val
GAC
[ENA]
¡û
>C08008919
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
6326934
6327008
+
Val
GAC
[Ensembl]
¡û
>C181012488
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
7663175
7663247
+
Val
GAC
-
¡û
>C191010017
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
5556701
5556773
+
Val
GAC
-
¡û
>C191010069
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
8008173
8008245
+
Val
GAC
-
¡û
>C151091974
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
8108347
8108419
+
Val
GAC
-
¡û
>C131010753
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
7824006
7824080
+
Val
GAC
[Ensembl]
¡û
>W1610520408
JELX01004122
Myxococcota
Sorangium cellulosum [JELX]
144
218
+
Val
GAC
[ENA]
¡û
>W1610520454
JELY01003306
Myxococcota
Sorangium cellulosum [JELY]
372
446
+
Val
GAC
[ENA]
¡û
>W1610520505
JELZ01002496
Myxococcota
Sorangium cellulosum [JELZ]
557
631
+
Val
GAC
[ENA]
¡û
>W1610520538
JEMA01000762
Myxococcota
Sorangium cellulosum [JEMA]
14849
14923
+
Val
GAC
[ENA]
¡û
>W1610520598
JEMB01002780
Myxococcota
Sorangium cellulosum [JEMB]
530
604
+
Val
GAC
[ENA]
¡û
>W1610520645
JEMC01002917
Myxococcota
Sorangium cellulosum [JEMC]
656
730
+
Val
GAC
[ENA]
¡û
>W1610520685
JEMD01001612
Myxococcota
Sorangium cellulosum [JEMD]
3270
3196
-
Val
GAC
[ENA]
¡û
>W1610520754
JEME01002750
Myxococcota
Sorangium cellulosum [JEME]
740
814
+
Val
GAC
[ENA]
¡û
>W1710615886
JELX01004122
Myxococcota
Sorangium cellulosum [JELX]
144
218
+
Val
GAC
[ENA]
¡û
>W1710615932
JELY01003306
Myxococcota
Sorangium cellulosum [JELY]
372
446
+
Val
GAC
[ENA]
¡û
>W1710615983
JELZ01002496
Myxococcota
Sorangium cellulosum [JELZ]
557
631
+
Val
GAC
[ENA]
¡û
>W1710616016
JEMA01000762
Myxococcota
Sorangium cellulosum [JEMA]
14849
14923
+
Val
GAC
[ENA]
¡û
>W1710616076
JEMB01002780
Myxococcota
Sorangium cellulosum [JEMB]
530
604
+
Val
GAC
[ENA]
¡û
>W1710616123
JEMC01002917
Myxococcota
Sorangium cellulosum [JEMC]
656
730
+
Val
GAC
[ENA]
¡û
>W1710616163
JEMD01001612
Myxococcota
Sorangium cellulosum [JEMD]
3270
3196
-
Val
GAC
[ENA]
¡û
>W1710616232
JEME01002750
Myxococcota
Sorangium cellulosum [JEME]
740
814
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK