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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338400 (52 seq.)
>W1711183525
LWLC01000002
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
59517
59589
+
Val
TAC
[ENA]
¡û
>W1711343479
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
5343611
5343685
+
Val
TAC
[ENA]
¡û
>W1711343531
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
5356923
5356997
+
Val
TAC
[ENA]
¡û
>W1711343607
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
114759
114685
-
Val
TAC
[ENA]
¡û
>W1711343665
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
370828
370756
-
Val
TAC
[ENA]
¡û
>W1711343672
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
833287
833361
+
Val
TAC
[ENA]
¡û
>W1711343752
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
5711997
5712069
+
Val
TAC
[ENA]
¡û
>W1711343795
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
5776323
5776251
-
Val
TAC
[ENA]
¡û
>W1711343860
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
5735641
5735713
+
Val
TAC
[ENA]
¡û
>W1711343897
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
1702823
1702897
+
Val
TAC
[ENA]
¡û
>W1711343975
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
4028015
4027943
-
Val
TAC
[ENA]
¡û
>W1711386200
MEFA01000097
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
1032
1106
+
Val
TAC
[ENA]
¡û
>W1711427796
MIFY01000021
Actinomycetota
Pseudonocardia autotrophica [MIFY]
147409
147481
+
Val
TAC
[ENA]
¡û
>W1711427976
MIGB01000035
Actinomycetota
Pseudonocardia autotrophica [MIGB]
53303
53377
+
Val
TAC
[ENA]
¡û
>W131231275
AUII01000021
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
9640
9566
-
Val
TAC
[ENA]
¡û
>W1711491757
MKJV01000091
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
20037
20111
+
Val
TAC
[ENA]
¡û
>W1711491839
MKJX01000176
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
62452
62526
+
Val
TAC
[ENA]
¡û
>W1711505776
MKVV01000038
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
6301
6227
-
Val
TAC
[ENA]
¡û
>W1711766534
MUYM01000061
Actinomycetota
Lentzea kentuckyensis [MUYM]
16947
16875
-
Val
TAC
[ENA]
¡û
>C171051040
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
559078
559007
-
Val
TAC
-
¡û
>WENV180690999
OCZS010045884
[OCZS] soil metagenome; soil
1273
1347
+
Val
TAC
[ENA]
¢þ
>WENV170660826
JXWU01039147
[JXWU] soil metagenome; rice field; organic control Plot
167
93
-
Val
TAC
[ENA]
¢þ
>C181081512
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
1454524
1454598
+
Val
TAC
-
¡û
>C191005728
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
2145088
2145161
+
Val
TAC
-
¡û
>W141757641
JNYA01002518
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
3494
3568
+
Val
TAC
[ENA]
¡û
>W141757793
JNYD01000035
Actinomycetota
Pseudonocardia autotrophica [JNYD]
75
1
-
Val
TAC
[ENA]
¡û
>W141757794
JNYD01000053
Actinomycetota
Pseudonocardia autotrophica [JNYD]
21716
21642
-
Val
TAC
[ENA]
¡û
>W141766491
JOEA01000001
Actinomycetota
Lentzea albidocapillata [JOEA]
142576
142648
+
Val
TAC
[ENA]
¡û
>W141771464
JOHE01000381
Actinomycetota
Lentzea aerocolonigenes [JOHE]
3906
3980
+
Val
TAC
[ENA]
¡û
>W1910182883
BJNG01000015
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
294484
294557
+
Val
TAC
[ENA]
¡û
>W1910182958
BJNH01000095
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
21247
21174
-
Val
TAC
[ENA]
¡û
>W1910994849
NKYF01000006
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
135887
135813
-
Val
TAC
[ENA]
¡û
>W1810121495
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
1814464
1814392
-
Val
TAC
[ENA]
¡û
>W1810763061
QQAU01000015
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
148815
148889
+
Val
TAC
[ENA]
¡û
>C151075014
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
3874114
3874040
-
Val
TAC
-
¡û
>C151087176
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
1911118
1911046
-
Val
TAC
-
¡û
>C151087183
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
1344673
1344745
+
Val
TAC
-
¡û
>W10118392
ADUJ01000195
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
6044
6118
+
Val
TAC
[ENA]
¡û
>W10128117
AEGE01000602
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
2692
2620
-
Val
TAC
[ENA]
¡û
>W11123467
ADUJ01000195
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
6044
6118
+
Val
TAC
[ENA]
¡û
>W11136827
AEGE01000602
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
2692
2620
-
Val
TAC
[ENA]
¡û
>W1511697478
LGDY01000125
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
87063
86992
-
Val
TAC
[ENA]
¡û
>C161040344
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
5512022
5511948
-
Val
TAC
-
¡û
>C161040420
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1078921
1078847
-
Val
TAC
[Ensembl]
¡û
>C161061296
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
4572902
4572976
+
Val
TAC
[Ensembl]
¡û
>W1610051167
BBGP01000056
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
2613
2687
+
Val
TAC
[ENA]
¡û
>W1710047566
BBGP01000056
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
2613
2687
+
Val
TAC
[ENA]
¡û
>W1710524684
FNIX01000011
Actinomycetota
Lentzea jiangxiensis [FNIX]
148259
148331
+
Val
TAC
[ENA]
¡û
>W1710551057
FOFT01000015
Actinomycetota
Lentzea flaviverrucosa [FOFT]
148815
148889
+
Val
TAC
[ENA]
¡û
>W1710570129
FOUY01000002
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
390831
390905
+
Val
TAC
[ENA]
¡û
>W1710589950
FRAP01000004
Actinomycetota
Pseudonocardia thermophila [FRAP]
2424
2352
-
Val
TAC
[ENA]
¡û
>W1710606835
FWYC01000011
Actinomycetota
Lentzea albidocapillata [FWYC]
274874
274802
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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