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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338410 (61 seq.)
>WENV180245410
OBDM01024180
[OBDM] human gut metagenome; human gut
273
347
+
Glu
TTC
[ENA]
¢þ
>WENV180337029
OBLG01010596
[OBLG] human gut metagenome; human gut
224
150
-
Glu
TTC
[ENA]
¢þ
>WENV180547211
OCIU01017988
[OCIU] human gut metagenome; human gut
1881
1955
+
Glu
TTC
[ENA]
¢þ
>WENV180564121
OCLD01023203
[OCLD] human gut metagenome; human gut
467
541
+
Glu
TTC
[ENA]
¢þ
>WENV180629684
OCQP01173122
[OCQP] human gut metagenome; human gut
219
145
-
Glu
TTC
[ENA]
¢þ
>WENV180741737
ODHH01000408
[ODHH] human metagenome; G_DNA_Stool
43706
43780
+
Glu
TTC
[ENA]
¢þ
>WENV180850347
ODKV01004988
[ODKV] human metagenome; G_DNA_Stool
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV180962813
ODUN01030916
[ODUN] human metagenome; G_DNA_Stool
780
706
-
Glu
TTC
[ENA]
¢þ
>WENV181637599
OGNB01017502
[OGNB] metagenome; Human gut stool
1457
1531
+
Glu
TTC
[ENA]
¢þ
>WENV181682477
OGOU01009994
[OGOU] human gut metagenome; faeces
3045
3119
+
Glu
TTC
[ENA]
¢þ
>WENV181701431
OGPH01001127
[OGPH] human gut metagenome; faeces
22284
22358
+
Glu
TTC
[ENA]
¢þ
>WENV181789845
OGRO01047996
[OGRO] human gut metagenome; faeces
192
118
-
Glu
TTC
[ENA]
¢þ
>WENV181833815
OGUQ01009941
[OGUQ] metagenome; Human gut stool
2847
2773
-
Glu
TTC
[ENA]
¢þ
>WENV181897345
OGXT01000087
[OGXT] human gut metagenome; faeces
39148
39222
+
Glu
TTC
[ENA]
¢þ
>WENV181928964
OGYO01007005
[OGYO] human gut metagenome; faeces
4972
4898
-
Glu
TTC
[ENA]
¢þ
>WENV182066867
OHFC01019576
[OHFC] human gut metagenome; feces
725
799
+
Glu
TTC
[ENA]
¢þ
>WENV182191940
OHOZ01000288
[OHOZ] human gut metagenome; feces
20777
20703
-
Glu
TTC
[ENA]
¢þ
>WENV182244657
OHSJ01001921
[OHSJ] human gut metagenome; feces
2479
2553
+
Glu
TTC
[ENA]
¢þ
>WENV182256188
OHTD01035818
[OHTD] human gut metagenome; feces
512
586
+
Glu
TTC
[ENA]
¢þ
>WENV182318826
OHYG01000076
[OHYG] human gut metagenome; feces
52449
52523
+
Glu
TTC
[ENA]
¢þ
>WENV182342922
OIAK01000043
[OIAK] human gut metagenome; feces
52051
52125
+
Glu
TTC
[ENA]
¢þ
>WENV182393459
OIEH01054235
[OIEH] human gut metagenome; human gut
493
567
+
Glu
TTC
[ENA]
¢þ
>WENV182398159
OIEN01000528
[OIEN] human gut metagenome; human gut
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV182884487
OKSC01000377
[OKSC] human gut metagenome; faeces
52402
52476
+
Glu
TTC
[ENA]
¢þ
>WENV183037914
OLGB01000020
[OLGB] human gut metagenome; faeces
79775
79849
+
Glu
TTC
[ENA]
¢þ
>WENV183143470
OLOK01048076
[OLOK] human gut metagenome; faeces
99
25
-
Glu
TTC
[ENA]
¢þ
>WENV183161374
OLOV01005556
[OLOV] human gut metagenome; faeces
6085
6159
+
Glu
TTC
[ENA]
¢þ
>WENV183162723
OLOW01001643
[OLOW] human gut metagenome; faeces
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV183180984
OLPI01002126
[OLPI] human gut metagenome; faeces
848
774
-
Glu
TTC
[ENA]
¢þ
>WENV183196513
OLPU01001305
[OLPU] human gut metagenome; faeces
239
165
-
Glu
TTC
[ENA]
¢þ
>WENV183206802
OLQA01002864
[OLQA] human gut metagenome; faeces
12797
12871
+
Glu
TTC
[ENA]
¢þ
>WENV183270114
OLRV01003553
[OLRV] human gut metagenome; faeces
7337
7411
+
Glu
TTC
[ENA]
¢þ
>WENV183293198
OLSK01000086
[OLSK] human gut metagenome; faeces
1054
980
-
Glu
TTC
[ENA]
¢þ
>WENV183315573
OLVS01000112
[OLVS] human gut metagenome; feces
43348
43274
-
Glu
TTC
[ENA]
¢þ
>WENV183325859
OLVZ01002723
[OLVZ] human gut metagenome; faeces
182
108
-
Glu
TTC
[ENA]
¢þ
>WENV183373330
OLXY01000163
[OLXY] human gut metagenome; feces
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV183378423
OLYC01000537
[OLYC] human gut metagenome; feces
18054
18128
+
Glu
TTC
[ENA]
¢þ
>WENV183383512
OLYM01009305
[OLYM] human gut metagenome; feces
2417
2491
+
Glu
TTC
[ENA]
¢þ
>WENV183433353
OMBU01010931
[OMBU] human gut metagenome; feces
107
181
+
Glu
TTC
[ENA]
¢þ
>WENV183434679
OMBZ01024984
[OMBZ] human gut metagenome; feces
813
887
+
Glu
TTC
[ENA]
¢þ
>WENV183519579
OMNT01001174
[OMNT] human gut metagenome; faeces
100
26
-
Glu
TTC
[ENA]
¢þ
>WENV183646030
OQVQ01065500
[OQVQ] human gut metagenome; human gut
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV183775952
PPYF01075177
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1645
1719
+
Glu
TTC
[ENA]
¢þ
>WENV170050878
CDZB01046337
[CDZB] gut metagenome; human stools
133
59
-
Glu
TTC
[ENA]
¢þ
>C181047823
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5428978
5428904
-
Glu
TTC
-
¡û
>C181047827
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5428644
5428570
-
Glu
TTC
-
¡û
>C181047879
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
3802192
3802118
-
Glu
TTC
-
¡û
>W141565571
JIBU02000009
Bacillota
Clostridium drakei [JIBU]
46241
46315
+
Glu
TTC
[ENA]
¡û
>W141565582
JIBU02000034
Bacillota
Clostridium drakei [JIBU]
90324
90250
-
Glu
TTC
[ENA]
¡û
>W141569543
JIDX01000022
Bacillota
Clostridium scatologenes [JIDX]
96009
96083
+
Glu
TTC
[ENA]
¡û
>W141569546
JIDX01000033
Bacillota
Clostridium scatologenes [JIDX]
95
21
-
Glu
TTC
[ENA]
¡û
>W09135083
ACVI01000016
Bacillota
Clostridium carboxidivorans P7 [ACVI]
23634
23708
+
Glu
TTC
[ENA]
¡û
>W1911491353
OAOD01000015
Bacillota
Clostridium peptidivorans [OAOD]
156
230
+
Glu
TTC
[ENA]
¡û
>W1911491363
OAOD01000024
Bacillota
Clostridium peptidivorans [OAOD]
43169
43243
+
Glu
TTC
[ENA]
¡û
>C151062254
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
362028
362102
+
Glu
TTC
[Ensembl]
¡û
>C151062258
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4492536
4492610
+
Glu
TTC
[Ensembl]
¡û
>C151086698
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
2967797
2967723
-
Glu
TTC
[Ensembl]
¡û
>W11115436
ADEK01000042
Bacillota
Clostridium carboxidivorans P7 [ADEK]
23622
23696
+
Glu
TTC
[ENA]
¡û
>W1511186993
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
206
280
+
Glu
TTC
[ENA]
¡û
>W1511186997
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
548
622
+
Glu
TTC
[ENA]
¡û
>W1511187037
JMFY01000052
Bacillota
Clostridium sp. HMP27 [JMFY]
3781
3855
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK