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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338432 (57 seq.)
>W1711377884
MDZH01000054
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
15121
15050
-
Gly
GCC
[ENA]
¡û
>W131063357
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
830805
830876
+
Gly
GCC
[ENA]
¡û
>W131087195
AOCI01000267
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
16358
16429
+
Gly
GCC
[ENA]
¡û
>W131203758
ASZQ01000149
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
835
906
+
Gly
GCC
[ENA]
¡û
>W1711603018
MOLN01000017
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
39161
39232
+
Gly
GCC
[ENA]
¡û
>W1711666539
MRCB01000005
Cyanobacteriota
Hydrococcus rivularis NIES-593 [MRCB]
171598
171527
-
Gly
GCC
[ENA]
¡û
>W1711666686
MRCE01000011
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
53781
53852
+
Gly
GCC
[ENA]
¡û
>W1711772024
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1445128
1445199
+
Gly
GCC
[ENA]
¡û
>C171016649
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2576245
2576174
-
Gly
GCC
-
¡û
>C171112055
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
981187
981258
+
Gly
GCC
-
¡û
>WENV180110806
OAPN01007351
[OAPN] marine metagenome; 2011
726
655
-
Gly
GCC
[ENA]
¢þ
>W141038405
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3465293
3465364
+
Gly
GCC
[ENA]
¡û
>W141038749
ALWD01000073
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
28612
28683
+
Gly
GCC
[ENA]
¡û
>W141065580
AQPY01000865
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
1973
1902
-
Gly
GCC
[ENA]
¡û
>W141073737
ASSJ01000079
Cyanobacteriota
Rubidibacter lacunae KORDI 51-2 [ASSJ]
178119
178048
-
Gly
GCC
[ENA]
¡û
>W141242387
CAIH01000380
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
22128
22199
+
Gly
GCC
[ENA]
¡û
>W141242418
CAII01000539
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
289
218
-
Gly
GCC
[ENA]
¡û
>W141242445
CAIJ01000200
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
28993
29064
+
Gly
GCC
[ENA]
¡û
>W141242475
CAIK01000043
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
2745
2816
+
Gly
GCC
[ENA]
¡û
>W141242522
CAIL01000093
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
8342
8413
+
Gly
GCC
[ENA]
¡û
>W141242581
CAIM01000538
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1009
938
-
Gly
GCC
[ENA]
¡û
>W141242602
CAIN01000159
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
30801
30730
-
Gly
GCC
[ENA]
¡û
>W141242649
CAIO01000349
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
348
419
+
Gly
GCC
[ENA]
¡û
>W141242680
CAIP01000155
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
27714
27643
-
Gly
GCC
[ENA]
¡û
>W141242729
CAIQ01000282
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
4688
4617
-
Gly
GCC
[ENA]
¡û
>C08006348
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2942586
2942657
+
Gly
GCC
[Ensembl]
¡û
>WENV170680921
LFEF01034518
[LFEF] freshwater metagenome; waterbloom
29796
29725
-
Gly
GCC
[ENA]
¢þ
>WENV170983730
MWVV01079610
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
540
611
+
Gly
GCC
[ENA]
¢þ
>WENV170984085
MWVV01164725
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
477
406
-
Gly
GCC
[ENA]
¢þ
>C181001753
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
1272251
1272322
+
Gly
GCC
-
¡û
>C181046155
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
527508
527579
+
Gly
GCC
-
¡û
>C191007251
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
829839
829910
+
Gly
GCC
-
¡û
>W1910020365
BDSG01000091
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
9644
9715
+
Gly
GCC
[ENA]
¡û
>W1910020385
BDSM01000009
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
112558
112629
+
Gly
GCC
[ENA]
¡û
>W1910038667
BEIU01000012
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
44847
44918
+
Gly
GCC
[ENA]
¡û
>W1910038703
BEIV01000033
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
25325
25254
-
Gly
GCC
[ENA]
¡û
>W1910067364
BEYQ01000008
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
225723
225794
+
Gly
GCC
[ENA]
¡û
>W1910067413
BFAC01000016
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
38992
39063
+
Gly
GCC
[ENA]
¡û
>W1910142317
BIFY01000003
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
58634
58705
+
Gly
GCC
[ENA]
¡û
>C09103540
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
3656577
3656648
+
Gly
GCC
[Ensembl]
¡û
>W1910665567
MCIH01000053
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
2602
2673
+
Gly
GCC
[ENA]
¡û
>W1910768705
MOLZ01000392
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
1484
1413
-
Gly
GCC
[ENA]
¡û
>W1911639004
PXOH01000018
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
96798
96869
+
Gly
GCC
[ENA]
¡û
>C151000961
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
2234834
2234763
-
Gly
GCC
[Ensembl]
¡û
>C151079380
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2577345
2577274
-
Gly
GCC
[Ensembl]
¡û
>C151080689
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
1730464
1730535
+
Gly
GCC
-
¡û
>W1510013639
BBPA01000066
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
54495
54424
-
Gly
GCC
[ENA]
¡û
>C161097297
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
135334
135407
+
Gly
GCC
[Ensembl]
¡û
>C131005029
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
2748517
2748446
-
Gly
GCC
[Ensembl]
¡û
>C131010443
CP003946
Cyanobacteriota
[Leptolyngbya] sp. PCC 7376 [CP003946]
1477714
1477785
+
Gly
GCC
[Ensembl]
¡û
>W1610550826
JXYX01000006
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
120427
120498
+
Gly
GCC
[ENA]
¡û
>W1710004735
AJHB01000957
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
295
366
+
Gly
GCC
[ENA]
¡û
>W1710005084
AJUS01001005
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
335
406
+
Gly
GCC
[ENA]
¡û
>W1710005121
AJUT01000949
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
295
366
+
Gly
GCC
[ENA]
¡û
>W1710005157
AJUU01000939
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
295
366
+
Gly
GCC
[ENA]
¡û
>W1710609608
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
681578
681651
+
Gly
GCC
[ENA]
¡û
>W1710660703
JXYX01000006
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
120427
120498
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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