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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338440 (98 seq.)
>W1711183758
LWLH01000004
Bacillota
Butyricicoccus sp. K4410.MGS-46 [LWLH]
26259
26333
+
Glu
TTC
[ENA]
¡û
>W1711183810
LWLI01000003
Bacillota
Butyricicoccus sp. N15.MGS-46 [LWLI]
129999
129925
-
Glu
TTC
[ENA]
¡û
>W131231455
AUIL01000057
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
14031
14105
+
Glu
TTC
[ENA]
¡û
>WENV180320315
OBKN01167351
[OBKN] human gut metagenome; human gut
87
161
+
Glu
TTC
[ENA]
¢þ
>WENV180738143
ODHC01074046
[ODHC] human metagenome; G_DNA_Stool
244
318
+
Glu
TTC
[ENA]
¢þ
>WENV180742633
ODHH01011995
[ODHH] human metagenome; G_DNA_Stool
1326
1252
-
Glu
TTC
[ENA]
¢þ
>W141074043
ASXP01000002
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
517092
517018
-
Glu
TTC
[ENA]
¡û
>WENV181231313
OFEK01019231
[OFEK] activated sludge metagenome; Anaerobic digester
769
695
-
Glu
TTC
[ENA]
¢þ
>WENV181337463
OFME01004830
[OFME] human gut metagenome; human gut
601
675
+
Glu
TTC
[ENA]
¢þ
>WENV181394269
OFRY01032399
[OFRY] human gut metagenome; human gut
136
62
-
Glu
TTC
[ENA]
¢þ
>WENV181418584
OGCM01005971
[OGCM] human gut metagenome; human gut
6530
6604
+
Glu
TTC
[ENA]
¢þ
>WENV181440209
OGDN01000712
[OGDN] human gut metagenome; human gut
64212
64286
+
Glu
TTC
[ENA]
¢þ
>WENV181547494
OGII01042542
[OGII] metagenome; Human gut stool
117
43
-
Glu
TTC
[ENA]
¢þ
>WENV181634891
OGMW01037662
[OGMW] metagenome; Human gut stool
127
53
-
Glu
TTC
[ENA]
¢þ
>WENV181693685
OGPA01034487
[OGPA] human gut metagenome; faeces
697
771
+
Glu
TTC
[ENA]
¢þ
>WENV181789412
OGRO01016988
[OGRO] human gut metagenome; faeces
2954
3028
+
Glu
TTC
[ENA]
¢þ
>WENV181868952
OGWX01004626
[OGWX] human gut metagenome; faeces
211
137
-
Glu
TTC
[ENA]
¢þ
>WENV181872337
OGWZ01002282
[OGWZ] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181887414
OGXL01004899
[OGXL] human gut metagenome; faeces
6693
6767
+
Glu
TTC
[ENA]
¢þ
>WENV181908214
OGYA01021606
[OGYA] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181923003
OGYK01033241
[OGYK] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181933271
OGYS01001425
[OGYS] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181935634
OGYU01010147
[OGYU] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181941352
OGYY01002448
[OGYY] human gut metagenome; faeces
10157
10083
-
Glu
TTC
[ENA]
¢þ
>WENV181957071
OGZL01002390
[OGZL] human gut metagenome; faeces
13381
13455
+
Glu
TTC
[ENA]
¢þ
>WENV181969444
OGZW01062198
[OGZW] human gut metagenome; faeces
620
694
+
Glu
TTC
[ENA]
¢þ
>WENV181972019
OGZZ01007792
[OGZZ] human gut metagenome; faeces
210
136
-
Glu
TTC
[ENA]
¢þ
>WENV182321285
OHYL01005185
[OHYL] human gut metagenome; feces
535
609
+
Glu
TTC
[ENA]
¢þ
>WENV182357047
OIBS01004102
[OIBS] human gut metagenome; feces
2327
2401
+
Glu
TTC
[ENA]
¢þ
>WENV182529340
OIWU01037663
[OIWU] human gut metagenome; faeces
1350
1424
+
Glu
TTC
[ENA]
¢þ
>WENV182539329
OIXV01003724
[OIXV] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV182705641
OJOV01002889
[OJOV] human gut metagenome; stool sample
1373
1299
-
Glu
TTC
[ENA]
¢þ
>WENV182716682
OJPJ01037503
[OJPJ] human gut metagenome; stool sample
413
487
+
Glu
TTC
[ENA]
¢þ
>WENV182891440
OKSH01001151
[OKSH] human gut metagenome; faeces
15488
15562
+
Glu
TTC
[ENA]
¢þ
>WENV183086398
OLJF01037380
[OLJF] metagenome; faeces
1095
1169
+
Glu
TTC
[ENA]
¢þ
>WENV183097776
OLNE01011282
[OLNE] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183101109
OLNG01003407
[OLNG] human gut metagenome; faeces
3734
3808
+
Glu
TTC
[ENA]
¢þ
>WENV183106468
OLNL01008138
[OLNL] human gut metagenome; faeces
3735
3809
+
Glu
TTC
[ENA]
¢þ
>WENV183108651
OLNN01000467
[OLNN] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183137388
OLOG01005871
[OLOG] human gut metagenome; faeces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183145929
OLOM01001859
[OLOM] human gut metagenome; faeces
13182
13256
+
Glu
TTC
[ENA]
¢þ
>WENV183159134
OLOU01000971
[OLOU] human gut metagenome; faeces
21805
21879
+
Glu
TTC
[ENA]
¢þ
>WENV183183404
OLPL01000226
[OLPL] human gut metagenome; faeces
43075
43149
+
Glu
TTC
[ENA]
¢þ
>WENV183189404
OLPQ01002015
[OLPQ] human gut metagenome; faeces
12740
12814
+
Glu
TTC
[ENA]
¢þ
>WENV183214058
OLQE01001153
[OLQE] human gut metagenome; faeces
423
349
-
Glu
TTC
[ENA]
¢þ
>WENV183216202
OLQH01000432
[OLQH] human gut metagenome; faeces
886
812
-
Glu
TTC
[ENA]
¢þ
>WENV183228540
OLQR01000880
[OLQR] human gut metagenome; faeces
19426
19500
+
Glu
TTC
[ENA]
¢þ
>WENV183232629
OLQU01037434
[OLQU] human gut metagenome; faeces
99
25
-
Glu
TTC
[ENA]
¢þ
>WENV183233196
OLQV01000410
[OLQV] human gut metagenome; faeces
16865
16939
+
Glu
TTC
[ENA]
¢þ
>WENV183237926
OLQY01002312
[OLQY] human gut metagenome; faeces
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV183239748
OLRA01001635
[OLRA] human gut metagenome; faeces
25535
25609
+
Glu
TTC
[ENA]
¢þ
>WENV183255459
OLRK01000304
[OLRK] human gut metagenome; faeces
61236
61310
+
Glu
TTC
[ENA]
¢þ
>WENV183264391
OLRR01017772
[OLRR] human gut metagenome; faeces
154
80
-
Glu
TTC
[ENA]
¢þ
>WENV183284391
OLSD01016206
[OLSD] human gut metagenome; faeces
2457
2531
+
Glu
TTC
[ENA]
¢þ
>WENV183289302
OLSG01002458
[OLSG] human gut metagenome; faeces
10811
10885
+
Glu
TTC
[ENA]
¢þ
>WENV183557490
OOBP01000971
[OOBP] human gut metagenome; human gut
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183594969
OODC01000833
[OODC] human gut metagenome; human gut
16909
16983
+
Glu
TTC
[ENA]
¢þ
>WENV183603040
OODK01000542
[OODK] human gut metagenome; human gut
23905
23979
+
Glu
TTC
[ENA]
¢þ
>WENV183612678
OODU01000487
[OODU] human gut metagenome; human gut
13225
13299
+
Glu
TTC
[ENA]
¢þ
>WENV183658642
OQWM01004174
[OQWM] human gut metagenome; human gut
3374
3300
-
Glu
TTC
[ENA]
¢þ
>WENV183774140
PPYF01030172
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7944
8018
+
Glu
TTC
[ENA]
¢þ
>WENV183780267
PPYF01165183
[PPYF] human gut metagenome; stool from patient with Crohn's disease
416
342
-
Glu
TTC
[ENA]
¢þ
>WENV170784086
MCHG01000009
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
62795
62721
-
Glu
TTC
[ENA]
¢þ
>WENV170784145
MCHG01000041
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
71929
71855
-
Glu
TTC
[ENA]
¢þ
>W1910638962
LSLK01000036
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
8189
8115
-
Glu
TTC
[ENA]
¡û
>W1910639000
LSLK01000073
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
66943
66869
-
Glu
TTC
[ENA]
¡û
>W1910639049
LSLK01000157
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
1552
1478
-
Glu
TTC
[ENA]
¡û
>W1810870988
QUCQ01000013
Bacillota
Butyricicoccus sp. AM18-35 [QUCQ]
62593
62519
-
Glu
TTC
[ENA]
¡û
>W1810878692
QUIJ01000011
Bacillota
Butyricicoccus sp. AM42-5AC [QUIJ]
12466
12392
-
Glu
TTC
[ENA]
¡û
>W1810880595
QUJR01000010
Bacillota
Butyricicoccus sp. AM27-36 [QUJR]
73651
73725
+
Glu
TTC
[ENA]
¡û
>W1810883037
QULN01000001
Bacillota
Butyricicoccus sp. OM04-18BH [QULN]
78308
78234
-
Glu
TTC
[ENA]
¡û
>C151038522
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1637950
1638024
+
Glu
TTC
[Ensembl]
¡û
>C151038546
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
4822581
4822655
+
Glu
TTC
[Ensembl]
¡û
>C151038551
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
4823004
4823078
+
Glu
TTC
[Ensembl]
¡û
>C151038586
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
2804065
2803991
-
Glu
TTC
[Ensembl]
¡û
>C151074828
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
1738015
1738089
+
Glu
TTC
[Ensembl]
¡û
>C151074844
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
2210154
2210228
+
Glu
TTC
[Ensembl]
¡û
>C151074850
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
5325952
5325878
-
Glu
TTC
[Ensembl]
¡û
>C151074855
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
5325533
5325459
-
Glu
TTC
[Ensembl]
¡û
>W1510586049
CTRP01000001
Bacillota
Sporomusa ovata An4 [CTRP]
32354
32280
-
Glu
TTC
[ENA]
¡û
>W121101530
AKVJ01000030
Bacillota
Pelosinus fermentans B4 [AKVJ]
246366
246292
-
Glu
TTC
[ENA]
¡û
>W121101535
AKVJ01000030
Bacillota
Pelosinus fermentans B4 [AKVJ]
245944
245870
-
Glu
TTC
[ENA]
¡û
>W121101547
AKVJ01000031
Bacillota
Pelosinus fermentans B4 [AKVJ]
225727
225801
+
Glu
TTC
[ENA]
¡û
>W121101656
AKVM01000072
Bacillota
Pelosinus fermentans A11 [AKVM]
7932
7858
-
Glu
TTC
[ENA]
¡û
>W121101661
AKVM01000072
Bacillota
Pelosinus fermentans A11 [AKVM]
7510
7436
-
Glu
TTC
[ENA]
¡û
>W121101667
AKVM01000074
Bacillota
Pelosinus fermentans A11 [AKVM]
21130
21056
-
Glu
TTC
[ENA]
¡û
>W121101724
AKVN01000034
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
7932
7858
-
Glu
TTC
[ENA]
¡û
>W121101729
AKVN01000034
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
7510
7436
-
Glu
TTC
[ENA]
¡û
>W121101735
AKVN01000037
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
135028
135102
+
Glu
TTC
[ENA]
¡û
>W121101751
AKVO01000029
Bacillota
Pelosinus fermentans JBW45 [AKVO]
45270
45196
-
Glu
TTC
[ENA]
¡û
>W121101754
AKVO01000033
Bacillota
Pelosinus fermentans JBW45 [AKVO]
80643
80717
+
Glu
TTC
[ENA]
¡û
>W121101759
AKVO01000033
Bacillota
Pelosinus fermentans JBW45 [AKVO]
81062
81136
+
Glu
TTC
[ENA]
¡û
>W1610989652
LWLH01000004
Bacillota
Butyricicoccus sp. K4410.MGS-46 [LWLH]
26259
26333
+
Glu
TTC
[ENA]
¡û
>W1610989704
LWLI01000003
Bacillota
Butyricicoccus sp. N15.MGS-46 [LWLI]
129999
129925
-
Glu
TTC
[ENA]
¡û
>W1710526285
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
2205978
2206052
+
Glu
TTC
[ENA]
¡û
>W1710526332
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
107021
106947
-
Glu
TTC
[ENA]
¡û
>W1710526337
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
106599
106525
-
Glu
TTC
[ENA]
¡û
>W1710568558
FOTS01000001
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
164166
164240
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK