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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338447 (51 seq.)
>C171101873
CP019965
Campylobacterota
Campylobacter jejuni NCTC12662 [CP019965]
173803
173877
+
Glu
TTC
-
¡û
>C171103192
CP020045
Campylobacterota
Campylobacter jejuni subsp. jejuni ATCC 35925 [CP020045]
175460
175534
+
Glu
TTC
-
¡û
>w017230
AARB02000001
Campylobacterota
Campylobacter jejuni subsp. doylei 269.97 [AARB]
171340
171416
+
Glu
TTC
[ENA]
¡û
>C08003255
CP000768
Campylobacterota
Campylobacter jejuni subsp. doylei 269.97 [CP000768]
171341
171415
+
Glu
TTC
[Ensembl]
¡û
>WENV183516186
OMKS01140534
[OMKS] sediment metagenome; hot spring sediment
310
384
+
Glu
TTC
[ENA]
¢þ
>WENV183704531
PDWI01000338
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15475
15549
+
Glu
TTC
[ENA]
¢þ
>WENV183705277
PDWI01001318
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
28738
28664
-
Glu
TTC
[ENA]
¢þ
>WENV183705537
PDWI01001785
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
33398
33472
+
Glu
TTC
[ENA]
¢þ
>WENV183705617
PDWI01001977
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
26523
26597
+
Glu
TTC
[ENA]
¢þ
>WENV183706346
PDWI01003852
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20710
20636
-
Glu
TTC
[ENA]
¢þ
>WENV183708252
PDWI01014100
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
362
288
-
Glu
TTC
[ENA]
¢þ
>WENV183708747
PDWI01019418
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
81
7
-
Glu
TTC
[ENA]
¢þ
>WENV183709118
PDWI01024067
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14
88
+
Glu
TTC
[ENA]
¢þ
>WENV183710306
PDWI01043868
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2328
2402
+
Glu
TTC
[ENA]
¢þ
>WENV183710322
PDWI01044057
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
411
485
+
Glu
TTC
[ENA]
¢þ
>WENV183711220
PDWI01063557
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1850
1924
+
Glu
TTC
[ENA]
¢þ
>WENV183711297
PDWI01065411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
73
1
-
Glu
TTC
[ENA]
¢þ
>WENV183711353
PDWI01067516
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2790
2716
-
Glu
TTC
[ENA]
¢þ
>WENV183712773
PDWI01113276
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1793
1719
-
Glu
TTC
[ENA]
¢þ
>WENV183713356
PDWI01135362
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
578
504
-
Glu
TTC
[ENA]
¢þ
>WENV183713962
PDWI01161253
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
148
74
-
Glu
TTC
[ENA]
¢þ
>WENV183715554
PDWI01246573
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
945
1019
+
Glu
TTC
[ENA]
¢þ
>WENV183720282
PDWJ01030843
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1012
938
-
Glu
TTC
[ENA]
¢þ
>WENV183722305
PDWJ01118590
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1165
1091
-
Glu
TTC
[ENA]
¢þ
>WENV170657741
JTFP01013915
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
564
490
-
Glu
TTC
[ENA]
¢þ
>WENV170686976
LFRM01171290
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3425
3499
+
Glu
TTC
[ENA]
¢þ
>WENV170718556
LSQX01081329
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
41781
41855
+
Glu
TTC
[ENA]
¢þ
>C181152159
CP027403
Campylobacterota
Campylobacter jejuni subsp. doylei FDAARGOS_295 [CP027403]
417681
417755
+
Glu
TTC
-
¡û
>C181169523
CP028911
Campylobacterota
Campylobacter jejuni NCTC 12661 [CP028911]
175460
175534
+
Glu
TTC
-
¡û
>C181204313
LS483295
Campylobacterota
Campylobacter jejuni subsp. doylei NCTC11925 [LS483295]
181978
182052
+
Glu
TTC
-
¡û
>C191208734
LR134359
Campylobacterota
Campylobacter jejuni subsp. doylei NCTC11951 [LR134359]
1638020
1638094
+
Glu
TTC
-
¡û
>C191214316
LR134530
Campylobacterota
Campylobacter jejuni subsp. doylei NCTC11924 [LR134530]
228431
228357
-
Glu
TTC
-
¡û
>W141732077
JNJR01000009
Campylobacterota
Campylobacter jejuni subsp. doylei ATCC 49349 [JNJR]
17373
17447
+
Glu
TTC
[ENA]
¡û
>W1810230523
PPAL01000007
Campylobacterota
Campylobacter concisus AAUH-12CDdes4 [PPAL]
46068
45994
-
Glu
TTC
[ENA]
¡û
>W1810230611
PPAN01000024
Campylobacterota
Campylobacter concisus AAUH-16UCf3 [PPAN]
17686
17760
+
Glu
TTC
[ENA]
¡û
>C151074210
CP010906
Campylobacterota
Campylobacter jejuni subsp. jejuni 35925 [CP010906]
173802
173876
+
Glu
TTC
[Ensembl]
¡û
>W1510754887
CYRT01000071
Campylobacterota
Campylobacter jejuni RC507 [CYRT]
17125
17196
+
Glu
TTC
[ENA]
¡û
>C161027447
CP010502
Campylobacterota
Campylobacter jejuni CJ677CC014 [CP010502]
120835
120909
+
Glu
TTC
-
¡û
>W1610109564
CZHJ01000014
Campylobacterota
Campylobacter jejuni [CZHJ]
73
147
+
Glu
TTC
[ENA]
¡û
>W1610110052
CZHV01000037
Campylobacterota
Campylobacter jejuni [CZHV]
58254
58180
-
Glu
TTC
[ENA]
¡û
>W1610111261
CZIY01000258
Campylobacterota
Campylobacter jejuni [CZIY]
464
390
-
Glu
TTC
[ENA]
¡û
>W1610177682
FBJX01000022
Campylobacterota
Campylobacter coli [FBJX]
28347
28273
-
Glu
TTC
[ENA]
¡û
>W1610580914
LBDP01000021
Campylobacterota
Campylobacter coli [LBDP]
17348
17422
+
Glu
TTC
[ENA]
¡û
>W1610581212
LBDX01000005
Campylobacterota
Campylobacter coli [LBDX]
28285
28211
-
Glu
TTC
[ENA]
¡û
>W1610581262
LBDY01000023
Campylobacterota
Campylobacter coli [LBDY]
28312
28238
-
Glu
TTC
[ENA]
¡û
>W1610581502
LBEE01000021
Campylobacterota
Campylobacter coli [LBEE]
17255
17329
+
Glu
TTC
[ENA]
¡û
>W1610581503
LBEF01000001
Campylobacterota
Campylobacter coli [LBEF]
28237
28163
-
Glu
TTC
[ENA]
¡û
>W1610581599
LBEH01000010
Campylobacterota
Campylobacter coli [LBEH]
17255
17329
+
Glu
TTC
[ENA]
¡û
>W1610634940
LISK01000008
Campylobacterota
Campylobacter jejuni [LISK]
74729
74655
-
Glu
TTC
[ENA]
¡û
>W1610720653
LMBF01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
28848
28774
-
Glu
TTC
[ENA]
¡û
>W1610720758
LMBI01000012
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
24954
25028
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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