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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338478 (33 seq.)
>W1711359913
MDJB01000030
Gammaproteobacteria
Haemophilus quentini [MDJB]
7258
7184
-
Gln
TTG
[ENA]
¡û
>W1711359960
MDJC01000033
Gammaproteobacteria
Haemophilus quentini [MDJC]
7218
7144
-
Gln
TTG
[ENA]
¡û
>W1711509744
MKZZ01000008
Gammaproteobacteria
Rodentibacter pneumotropicus [MKZZ]
28904
28978
+
Gln
TTG
[ENA]
¡û
>C022524
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1198066
1198140
+
Gln
TTG
[Ensembl]
¡û
>C023288
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312449
3312375
-
Gln
TTG
[Ensembl]
¡û
>w022925
AAWY01000064
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
14048
13972
-
Gln
TTG
[ENA]
¡û
>WENV180121198
OASQ01004045
[OASQ] human gut metagenome; faeces
164
90
-
Gln
TTG
[ENA]
¢þ
>WENV180457007
OBXT01001656
[OBXT] human gut metagenome; faeces
79
153
+
Gln
TTG
[ENA]
¢þ
>WENV180831475
ODKB01226853
[ODKB] human metagenome; G_DNA_Tongue dorsum
121
47
-
Gln
TTG
[ENA]
¢þ
>WENV181819299
OGTZ01001241
[OGTZ] metagenome; Human gut stool
2239
2165
-
Gln
TTG
[ENA]
¢þ
>W141227902
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62490
62564
+
Gln
TTG
[ENA]
¡û
>W141227906
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62950
63024
+
Gln
TTG
[ENA]
¡û
>W141265853
CCFL01000027
Gammaproteobacteria
Haemophilus massiliensis FF7 [CCFL]
193282
193356
+
Gln
TTG
[ENA]
¡û
>W141267126
CCNK01000027
Gammaproteobacteria
Haemophilus massiliensis FF7 [CCNK]
193282
193356
+
Gln
TTG
[ENA]
¡û
>WENV182974129
OKXO01001504
[OKXO] human gut metagenome; human gut
3641
3715
+
Gln
TTG
[ENA]
¢þ
>C181165413
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3744984
3745058
+
Gln
TTG
-
¡û
>W09104291
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4796
4870
+
Gln
TTG
[ENA]
¡û
>W1911775841
QXNM01000091
Gammaproteobacteria
Rodentibacter pneumotropicus Ppn95 [QXNM]
6311
6385
+
Gln
TTG
[ENA]
¡û
>C151015072
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1677473
1677547
+
Gln
TTG
[Ensembl]
¡û
>C151015073
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1677603
1677677
+
Gln
TTG
[Ensembl]
¡û
>C151015508
CP006957
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-184 [CP006957]
2038425
2038499
+
Gln
TTG
[Ensembl]
¡û
>W1510069645
CDEX01000041
Gammaproteobacteria
Necropsobacter massiliensis FF6 [CDEX]
405210
405284
+
Gln
TTG
[ENA]
¡û
>W1510074791
CDNG01000001
Gammaproteobacteria
Necropsobacter massiliensis FF6 [CDNG]
405210
405284
+
Gln
TTG
[ENA]
¡û
>W1510076494
CDON01000001
Gammaproteobacteria
Necropsobacter massiliensis FF6 [CDON]
405210
405284
+
Gln
TTG
[ENA]
¡û
>W1510076495
CDON01000001
Gammaproteobacteria
Necropsobacter massiliensis FF6 [CDON]
405325
405399
+
Gln
TTG
[ENA]
¡û
>C11121557
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3391426
3391352
-
Gln
TTG
[Ensembl]
¡û
>W11171645
AFQR01000024
Gammaproteobacteria
Haemophilus haemolyticus M21639 [AFQR]
8056
7982
-
Gln
TTG
[ENA]
¡û
>W1610072061
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24336
24410
+
Gln
TTG
[ENA]
¡û
>W1610609544
LFXW01000001
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
29571
29497
-
Gln
TTG
[ENA]
¡û
>W1610609823
LFYC01000011
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
29434
29360
-
Gln
TTG
[ENA]
¡û
>W1610609824
LFYC01000011
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
29305
29231
-
Gln
TTG
[ENA]
¡û
>W1710069263
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24336
24410
+
Gln
TTG
[ENA]
¡û
>W1710730831
LFXW01000001
Gammaproteobacteria
Mannheimia haemolytica [LFXW]
29571
29497
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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