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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338509 (59 seq.)
>W1711179150
LWHJ01000032
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
128114
128186
+
Glu
TTC
[ENA]
¡û
>W1711629949
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
4544383
4544309
-
Glu
TTC
[ENA]
¡û
>W1711629950
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
4544217
4544143
-
Glu
TTC
[ENA]
¡û
>C171089482
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
86703
86777
+
Glu
TTC
-
¡û
>C171089483
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
351252
351324
+
Glu
TTC
-
¡û
>C171089484
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
383208
383280
+
Glu
TTC
-
¡û
>WENV180025061
FTIL01056405
[FTIL] metagenome; soil
78
6
-
Glu
TTC
[ENA]
¢þ
>WENV180028210
FTJA01003907
[FTJA] metagenome; soil
77
5
-
Glu
TTC
[ENA]
¢þ
>WENV180099374
NMRC01000253
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
1306
1234
-
Glu
TTC
[ENA]
¢þ
>W141027943
AKZJ01000012
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
309643
309571
-
Glu
TTC
[ENA]
¡û
>W141027945
AKZJ01000012
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
309372
309300
-
Glu
TTC
[ENA]
¡û
>WENV180344580
OBLL01049587
[OBLL] soil metagenome; soil
193
265
+
Glu
TTC
[ENA]
¢þ
>W141075063
ASZT01000503
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
8227
8301
+
Glu
TTC
[ENA]
¡û
>W141075082
ASZT01000657
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
47094
47166
+
Glu
TTC
[ENA]
¡û
>W141075092
ASZT01000797
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
4250
4176
-
Glu
TTC
[ENA]
¡û
>WENV183092187
OLKV01000227
[OLKV] soil metagenome; soil
18858
18930
+
Glu
TTC
[ENA]
¢þ
>WENV183732336
PJTX01000023
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
103750
103822
+
Glu
TTC
[ENA]
¢þ
>WENV183732347
PJTX01000039
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
14410
14482
+
Glu
TTC
[ENA]
¢þ
>WENV183732348
PJTX01000039
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
38946
39018
+
Glu
TTC
[ENA]
¢þ
>WENV170990834
MWWA01054256
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
447
375
-
Glu
TTC
[ENA]
¢þ
>WENV170995861
MWWF01077730
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
275
347
+
Glu
TTC
[ENA]
¢þ
>WENV170996493
MWWF01294454
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
261
187
-
Glu
TTC
[ENA]
¢þ
>WENV170998827
MWWJ01120592
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
425
351
-
Glu
TTC
[ENA]
¢þ
>C181072015
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
157418
157346
-
Glu
TTC
-
¡û
>W1910377910
FUKU01000013
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
253262
253190
-
Glu
TTC
[ENA]
¡û
>W1910377953
FUKU01000071
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
34046
33974
-
Glu
TTC
[ENA]
¡û
>W1910378042
FUKX01000014
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
30543
30615
+
Glu
TTC
[ENA]
¡û
>W1910378044
FUKX01000017
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
134122
134194
+
Glu
TTC
[ENA]
¡û
>W1910378045
FUKX01000017
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
189695
189767
+
Glu
TTC
[ENA]
¡û
>SRA1003437
SRR002326.464531
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
192
118
-
Glu
TTC
[SRA]
>W1810503652
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
71193
71121
-
Glu
TTC
[ENA]
¡û
>W1810503665
QBKH01000004
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
428943
428871
-
Glu
TTC
[ENA]
¡û
>W1810503666
QBKH01000004
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
375207
375135
-
Glu
TTC
[ENA]
¡û
>W1810789514
QRGR01000038
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
14694
14622
-
Glu
TTC
[ENA]
¡û
>C151047331
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
228904
228978
+
Glu
TTC
[Ensembl]
¡û
>C151047332
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
282846
282920
+
Glu
TTC
[Ensembl]
¡û
>C151047365
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
5213331
5213405
+
Glu
TTC
[Ensembl]
¡û
>W1511206115
JMTN01000012
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
60450
60376
-
Glu
TTC
[ENA]
¡û
>W11138405
AEIH01000128
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
14216
14290
+
Glu
TTC
[ENA]
¡û
>W11138406
AEIH01000128
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
14387
14461
+
Glu
TTC
[ENA]
¡û
>C161076970
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
194058
194132
+
Glu
TTC
-
¡û
>C161076998
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
4018332
4018258
-
Glu
TTC
-
¡û
>C161076999
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3904974
3904900
-
Glu
TTC
-
¡û
>C161077147
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
1677624
1677696
+
Glu
TTC
[Ensembl]
¡û
>W1610612071
LGEK01000011
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
66471
66545
+
Glu
TTC
[ENA]
¡û
>W1610987102
LWHJ01000032
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
128114
128186
+
Glu
TTC
[ENA]
¡û
>W1710513678
FNAI01000011
Bacteroidota
Mucilaginibacter pineti [FNAI]
12315
12387
+
Glu
TTC
[ENA]
¡û
>W1710525878
FNJV01000010
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
117466
117538
+
Glu
TTC
[ENA]
¡û
>W1710543705
FOAF01000012
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
12224
12296
+
Glu
TTC
[ENA]
¡û
>W1710543706
FOAF01000012
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
86738
86664
-
Glu
TTC
[ENA]
¡û
>W1710557927
FOLL01000002
Bacteroidota
Parapedobacter composti [FOLL]
350876
350950
+
Glu
TTC
[ENA]
¡û
>W1710577038
FPAM01000011
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
69065
69139
+
Glu
TTC
[ENA]
¡û
>W1710577039
FPAM01000011
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
69231
69305
+
Glu
TTC
[ENA]
¡û
>W1710578993
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
1073830
1073904
+
Glu
TTC
[ENA]
¡û
>W1710578998
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
185116
185042
-
Glu
TTC
[ENA]
¡û
>W1710578999
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
71758
71684
-
Glu
TTC
[ENA]
¡û
>W1710592456
FRCM01000003
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
381894
381968
+
Glu
TTC
[ENA]
¡û
>W1710595929
FTMG01000002
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
400913
400987
+
Glu
TTC
[ENA]
¡û
>W1710733577
LGEK01000011
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
66471
66545
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK