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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338529 (36 seq.)
>W1711258875
LYUX01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
30159
30231
+
Asn
GTT
[ENA]
¡û
>C008310
CP000236
Alphaproteobacteria
Ehrlichia chaffeensis str. Arkansas [CP000236]
751215
751286
+
Asn
GTT
[Ensembl]
¡û
>C026883
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
517429
517358
-
Asn
GTT
[Ensembl]
¡û
>WENV180381009
OBOR01083375
[OBOR] marine metagenome; ENVO 00002227
391
317
-
Asn
GTT
[ENA]
¢þ
>WENV180393246
OBPQ01007994
[OBPQ] marine metagenome; polypropylene bottle
254
180
-
Asn
GTT
[ENA]
¢þ
>WENV180587721
OCOO01037790
[OCOO] marine metagenome; seawater
44
118
+
Lys
TTT
[ENA]
¢þ
>WENV180589705
OCOS01007302
[OCOS] marine metagenome; Sterile flask
283
357
+
Asn
GTT
[ENA]
¢þ
>W141065633
AQQE01000051
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
144
216
+
Asn
GTT
[ENA]
¡û
>WENV170430576
CEUR01334299
[CEUR] marine metagenome genome assembly TARA_123_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3274
3200
-
Asn
GTT
[ENA]
¢þ
>WENV170471230
CEVG01048549
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
107
181
+
Asn
GTT
[ENA]
¢þ
>WENV170497510
CEVS01189995
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
103
29
-
Asn
GTT
[ENA]
¢þ
>WENV170923339
MDTG01047761
[MDTG] marine metagenome; seawater
19334
19260
-
Asn
GTT
[ENA]
¢þ
>WENV170944208
MDTG01410132
[MDTG] marine metagenome; seawater
22348
22422
+
Asn
GTT
[ENA]
¢þ
>C191123110
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
930021
929949
-
Asn
GTT
-
¡û
>C191123150
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
997326
997254
-
Asn
GTT
-
¡û
>W141812279
JQAM01000024
Alphaproteobacteria
Wolbachia pipientis [JQAM]
108427
108499
+
Asn
GTT
[ENA]
¡û
>C141010588
CP006917
Alphaproteobacteria
Ehrlichia muris AS145 [CP006917]
431624
431552
-
Asn
GTT
[Ensembl]
¡û
>W1910753955
MKIF01000051
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
145
217
+
Asn
GTT
[ENA]
¡û
>W1911239523
NSDT01000047
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
12116
12044
-
Asn
GTT
[ENA]
¡û
>W1911281112
NTHL01000062
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
13027
12955
-
Asn
GTT
[ENA]
¡û
>C151024808
CP007473
Alphaproteobacteria
Ehrlichia chaffeensis str. Heartland [CP007473]
743727
743799
+
Asn
GTT
[Ensembl]
¡û
>C151024844
CP007474
Alphaproteobacteria
Ehrlichia japonica HF [CP007474]
730378
730450
+
Asn
GTT
[Ensembl]
¡û
>C151024899
CP007475
Alphaproteobacteria
Ehrlichia chaffeensis str. Jax [CP007475]
451646
451574
-
Asn
GTT
[Ensembl]
¡û
>C151024935
CP007476
Alphaproteobacteria
Ehrlichia chaffeensis str. Liberty [CP007476]
450971
450899
-
Asn
GTT
[Ensembl]
¡û
>C151024951
CP007477
Alphaproteobacteria
Ehrlichia chaffeensis str. Osceola [CP007477]
743828
743900
+
Asn
GTT
[Ensembl]
¡û
>C151025008
CP007478
Alphaproteobacteria
Ehrlichia chaffeensis str. Saint Vincent [CP007478]
450460
450388
-
Asn
GTT
[Ensembl]
¡û
>C151025044
CP007479
Alphaproteobacteria
Ehrlichia chaffeensis str. Wakulla [CP007479]
450897
450825
-
Asn
GTT
[Ensembl]
¡û
>C151025060
CP007480
Alphaproteobacteria
Ehrlichia chaffeensis str. West Paces [CP007480]
741097
741169
+
Asn
GTT
[Ensembl]
¡û
>C151101087
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
617251
617326
+
Asn
GTT
-
¡û
>W1510562603
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
233539
233611
+
Asn
GTT
[ENA]
¡û
>W1511536220
JYPC01000026
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
1232
1304
+
Asn
GTT
[ENA]
¡û
>W1511574370
LANU01000001
Alphaproteobacteria
Ehrlichia muris muris str. EmCRT [LANU]
156665
156593
-
Asn
GTT
[ENA]
¡û
>C131019564
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
21504
21579
+
Asn
GTT
[Ensembl]
¡û
>C131009137
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
275909
275837
-
Asn
GTT
[Ensembl]
¡û
>W1611021140
LYUX01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
30159
30231
+
Asn
GTT
[ENA]
¡û
>W1710619357
JHOH01000001
Alphaproteobacteria
Ehrlichia sp. Wisconsin_h [JHOH]
334924
334996
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK