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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338533 (43 seq.)
>W1711475420
MJUD01000002
Bacillota
Listeria seeligeri [MJUD]
29921
29992
+
Arg
CCT
[ENA]
¡û
>WENV180121242
OASR01000021
[OASR] human gut metagenome; faeces
17618
17545
-
Arg
CCT
[ENA]
¢þ
>WENV180141322
OATU01006737
[OATU] human gut metagenome; faeces
2239
2312
+
Arg
CCT
[ENA]
¢þ
>WENV180455338
OBXO01001527
[OBXO] human gut metagenome; faeces
1183
1110
-
Arg
CCT
[ENA]
¢þ
>WENV182402318
OIES01004536
[OIES] human gut metagenome; human gut
144
71
-
Arg
CCT
[ENA]
¢þ
>WENV182613143
OJJZ01000607
[OJJZ] metagenome; faeces
758
685
-
Arg
CCT
[ENA]
¢þ
>WENV182963248
OKWQ01000015
[OKWQ] human gut metagenome; stool
126701
126774
+
Arg
CCT
[ENA]
¢þ
>C181225848
LT906466
Bacillota
Listeria ivanovii subsp. ivanovii NCTC11007 [LT906466]
1773721
1773792
+
Arg
CCT
-
¡û
>C181226510
LT906478
Bacillota
Listeria ivanovii subsp. ivanovii NCTC11846 [LT906478]
1773718
1773789
+
Arg
CCT
-
¡û
>C191210463
LR134394
Bacillota
Listeria ivanovii subsp. londoniensis NCTC12701 [LR134394]
1879196
1879267
+
Arg
CCT
-
¡û
>W141703169
JMLZ01000002
Bacillota
Robinsoniella sp. KNHs210 [JMLZ]
3337100
3337027
-
Arg
CCT
[ENA]
¡û
>W1910213318
FMJR01000087
Bacillota
Robinsoniella peoriensis [FMJR]
9486
9413
-
Arg
CCT
[ENA]
¡û
>W1910496505
FXUT01000005
Bacillota
Listeria costaricensis 102 [FXUT]
63942
63869
-
Arg
CCT
[ENA]
¡û
>W1810233277
PPDI01000048
Bacillota
Listeria ivanovii ICDC-Liv047 [PPDI]
7688
7759
+
Arg
CCT
[ENA]
¡û
>W1810235387
PPFF01000048
Bacillota
Listeria ivanovii ICDC-Liv048 [PPFF]
7688
7759
+
Arg
CCT
[ENA]
¡û
>W1810235440
PPFG01000050
Bacillota
Listeria ivanovii ICDC-Liv049 [PPFG]
3586
3515
-
Arg
CCT
[ENA]
¡û
>W1810235477
PPFH01000050
Bacillota
Listeria ivanovii ICDC-Liv050 [PPFH]
3602
3531
-
Arg
CCT
[ENA]
¡û
>W1810235513
PPFI01000050
Bacillota
Listeria ivanovii ICDC-Liv051 [PPFI]
7661
7732
+
Arg
CCT
[ENA]
¡û
>W1810235567
PPFJ01000047
Bacillota
Listeria ivanovii ICDC-Liv052 [PPFJ]
7688
7759
+
Arg
CCT
[ENA]
¡û
>W1810235608
PPFK01000050
Bacillota
Listeria ivanovii ICDC-Liv053 [PPFK]
7661
7732
+
Arg
CCT
[ENA]
¡û
>W1810235641
PPFL01000047
Bacillota
Listeria ivanovii ICDC-Liv054 [PPFL]
7688
7759
+
Arg
CCT
[ENA]
¡û
>W1810238410
PPPE01000048
Bacillota
Listeria ivanovii ICDC-Liv055 [PPPE]
7688
7759
+
Arg
CCT
[ENA]
¡û
>W1810238446
PPPF01000079
Bacillota
Listeria ivanovii ICDC-Liv007 [PPPF]
2503
2432
-
Arg
CCT
[ENA]
¡û
>W1810238502
PPPG01000007
Bacillota
Listeria ivanovii ICDC-Liv035 [PPPG]
20445
20516
+
Arg
CCT
[ENA]
¡û
>W1810238545
PPPH01000008
Bacillota
Listeria ivanovii ICDC-Liv023 [PPPH]
72934
72863
-
Arg
CCT
[ENA]
¡û
>W1810238618
PPPI01000007
Bacillota
Listeria ivanovii ICDC-Liv037 [PPPI]
20239
20310
+
Arg
CCT
[ENA]
¡û
>W1810238646
PPPJ01000008
Bacillota
Listeria ivanovii ICDC-Liv021 [PPPJ]
28136
28207
+
Arg
CCT
[ENA]
¡û
>W1810238676
PPPK01000010
Bacillota
Listeria ivanovii ICDC-Liv028 [PPPK]
28161
28232
+
Arg
CCT
[ENA]
¡û
>W1810692545
QLKP01000437
Bacillota
Listeria ivanovii ICDC-Liv001 [QLKP]
591
662
+
Arg
CCT
[ENA]
¡û
>C151017978
CP007172
Bacillota
Listeria ivanovii WSLC3009 [CP007172]
1829355
1829426
+
Arg
CCT
[Ensembl]
¡û
>C151054435
CP009575
Bacillota
Listeria ivanovii subsp. londoniensis WSLC 30167 [CP009575]
1884901
1884972
+
Arg
CCT
[Ensembl]
¡û
>C151054502
CP009576
Bacillota
Listeria ivanovii subsp. londoniensis WSLC 30151 [CP009576]
1946733
1946804
+
Arg
CCT
[Ensembl]
¡û
>C151054569
CP009577
Bacillota
Listeria ivanovii subsp. ivanovii WSLC 3010 [CP009577]
1829352
1829423
+
Arg
CCT
[Ensembl]
¡û
>C10109100
FN557490
Bacillota
Listeria seeligeri serovar 1/2b str. SLCC3954 [FN557490]
1726564
1726635
+
Arg
CCT
[Ensembl]
¡û
>W1510647716
CVPH01000006
Bacillota
Listeria ivanovii subsp. ivanovii PAM 55 G_770 [CVPH]
20587
20658
+
Arg
CCT
[ENA]
¡û
>W1511222140
JNGB01000154
Bacillota
Robinsoniella sp. RHS [JNGB]
714
787
+
Arg
CCT
[ENA]
¡û
>W1511400467
JTGN01000015
Bacillota
Robinsoniella peoriensis WT [JTGN]
116599
116526
-
Arg
CCT
[ENA]
¡û
>W11127219
ADXI01000891
Bacillota
Listeria ivanovii FSL F6-596 [ADXI]
1251
1322
+
Arg
CCT
[ENA]
¡û
>W11127239
ADXJ01000737
Bacillota
Listeria seeligeri FSL N1-067 [ADXJ]
1561
1632
+
Arg
CCT
[ENA]
¡û
>W11127260
ADXK01000858
Bacillota
Listeria seeligeri FSL S4-171 [ADXK]
514
585
+
Arg
CCT
[ENA]
¡û
>W1511535250
JYOM01000008
Bacillota
Listeria seeligeri 7KSM [JYOM]
71863
71792
-
Arg
CCT
[ENA]
¡û
>C121017138
FR687253
Bacillota
Listeria ivanovii subsp. ivanovii PAM 55 [FR687253]
1782863
1782934
+
Arg
CCT
[Ensembl]
¡û
>W1710528099
FNMX01000012
Bacillota
Listeria ivanovii [FNMX]
28343
28414
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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