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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338547 (109 seq.)
>W131156824
AQQF01000143
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
32509
32583
+
Cys
GCA
[ENA]
¡û
>W131232796
AUJN01000015
Bacillota
Clostridium butyricum AGR2140 [AUJN]
34303
34229
-
Cys
GCA
[ENA]
¡û
>W1711791636
MWJB01000019
Bacillota
Clostridium botulinum [MWJB]
9200
9274
+
Cys
GCA
[ENA]
¡û
>W1711791740
MWJC01000027
Bacillota
Clostridium botulinum [MWJC]
9310
9384
+
Cys
GCA
[ENA]
¡û
>W1711791790
MWJD01000001
Bacillota
Clostridium botulinum [MWJD]
1531845
1531919
+
Cys
GCA
[ENA]
¡û
>W1711791942
MWJG01000002
Bacillota
Clostridium botulinum [MWJG]
177636
177710
+
Cys
GCA
[ENA]
¡û
>W1711794358
MWMH01000008
Bacillota
Clostridium beijerinckii [MWMH]
325
399
+
Cys
GCA
[ENA]
¡û
>C171045659
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
153916
153990
+
Cys
GCA
-
¡û
>C171046026
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
3070556
3070630
+
Cys
GCA
-
¡û
>C171059557
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
1612995
1612921
-
Cys
GCA
-
¡û
>W131098412
AORM01000159
Bacillota
Clostridium botulinum CB11/1-1 [AORM]
47965
48039
+
Cys
GCA
[ENA]
¡û
>C007093
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2414867
2414793
-
Cys
GCA
[Ensembl]
¡û
>WENV180129307
OATC01000647
[OATC] human gut metagenome; faeces
4852
4778
-
Cys
GCA
[ENA]
¢þ
>WENV180153098
OAUR01000776
[OAUR] human gut metagenome; faeces
14
88
+
Cys
GCA
[ENA]
¢þ
>W141039816
ALYJ01000108
Bacillota
Clostridium botulinum CDC66177 [ALYJ]
54193
54267
+
Cys
GCA
[ENA]
¡û
>WENV180444328
OBWZ01001098
[OBWZ] human gut metagenome; faeces
19
93
+
Cys
GCA
[ENA]
¢þ
>WENV180504936
OCAO01000264
[OCAO] human gut metagenome; faeces
6302
6228
-
Cys
GCA
[ENA]
¢þ
>WENV180506759
OCAS01006039
[OCAS] human gut metagenome; faeces
2183
2109
-
Cys
GCA
[ENA]
¢þ
>WENV180761329
ODHZ01008804
[ODHZ] human metagenome; G_DNA_Stool
2185
2111
-
Cys
GCA
[ENA]
¢þ
>WENV180957447
ODUK01048044
[ODUK] human metagenome; G_DNA_Stool
473
399
-
Cys
GCA
[ENA]
¢þ
>WENV181426955
OGCQ01020642
[OGCQ] human gut metagenome; human gut
133
207
+
Cys
GCA
[ENA]
¢þ
>WENV181753066
OGQQ01057996
[OGQQ] human gut metagenome; faeces
656
582
-
Cys
GCA
[ENA]
¢þ
>WENV181811212
OGSY01000256
[OGSY] human gut metagenome; fecal sample 5 from infant 8
18624
18698
+
Cys
GCA
[ENA]
¢þ
>WENV181811625
OGSZ01000097
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
32459
32533
+
Cys
GCA
[ENA]
¢þ
>WENV182695730
OJOJ01024937
[OJOJ] human gut metagenome; human gut
112
38
-
Cys
GCA
[ENA]
¢þ
>WENV182855833
OKNE01004320
[OKNE] human gut metagenome; human gut
1
75
+
Cys
GCA
[ENA]
¢þ
>WENV182865668
OKQK01006830
[OKQK] human gut metagenome; human gut
460
386
-
Cys
GCA
[ENA]
¢þ
>WENV182952918
OKVX01000610
[OKVX] human gut metagenome; human gut
1365
1439
+
Cys
GCA
[ENA]
¢þ
>C08002665
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
1852148
1852077
-
Cys
GCA
[Ensembl]
¡û
>C08002568
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
1964068
1964142
+
Cys
GCA
[Ensembl]
¡û
>WENV183781045
PPYF01191602
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1348
1422
+
Cys
GCA
[ENA]
¢þ
>W09134203
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
1936569
1936643
+
Cys
GCA
[ENA]
¡û
>W141822328
JQOJ01000119
Bacillota
Clostridium botulinum [JQOJ]
25985
25911
-
Cys
GCA
[ENA]
¡û
>W141822340
JQOK01000036
Bacillota
Clostridium botulinum [JQOK]
109086
109012
-
Cys
GCA
[ENA]
¡û
>W1911159909
NPMX01000006
Bacillota
Clostridium botulinum 202F [NPMX]
173068
172994
-
Cys
GCA
[ENA]
¡û
>W1911159976
NPMY01000002
Bacillota
Clostridium botulinum Hazen [NPMY]
56687
56613
-
Cys
GCA
[ENA]
¡û
>W1911533807
OKRA01000001
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
1367262
1367188
-
Cys
GCA
[ENA]
¡û
>W1911694143
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
170361
170287
-
Cys
GCA
[ENA]
¡û
>W1911694168
QMAP01000005
Bacillota
Clostridium tetani 2017.061 [QMAP]
110590
110664
+
Cys
GCA
[ENA]
¡û
>W1911694245
QMAQ01000032
Bacillota
Clostridium tetani 202.15 [QMAQ]
110230
110304
+
Cys
GCA
[ENA]
¡û
>W1911694322
QMAR01000023
Bacillota
Clostridium tetani 157.15 [QMAR]
150708
150634
-
Cys
GCA
[ENA]
¡û
>W1911694377
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
151405
151479
+
Cys
GCA
[ENA]
¡û
>W1911694415
QMAT01000001
Bacillota
Clostridium tetani 46.1.08 [QMAT]
150315
150389
+
Cys
GCA
[ENA]
¡û
>W1911694506
QMAU01000021
Bacillota
Clostridium tetani 63.05 [QMAU]
7662
7588
-
Cys
GCA
[ENA]
¡û
>W1911694531
QMAV01000002
Bacillota
Clostridium tetani 358.99 [QMAV]
146807
146881
+
Cys
GCA
[ENA]
¡û
>W1911694585
QMAW01000003
Bacillota
Clostridium tetani 75.97 [QMAW]
110173
110247
+
Cys
GCA
[ENA]
¡û
>W1911694644
QMAX01000003
Bacillota
Clostridium tetani 407.86 [QMAX]
110173
110247
+
Cys
GCA
[ENA]
¡û
>W1911694705
QMAY01000004
Bacillota
Clostridium tetani 641.84 [QMAY]
154208
154134
-
Cys
GCA
[ENA]
¡û
>W1911694795
QMAZ01000022
Bacillota
Clostridium tetani 132CV [QMAZ]
81220
81146
-
Cys
GCA
[ENA]
¡û
>W1911694863
QMBA01000013
Bacillota
Clostridium tetani 3582 [QMBA]
163075
163149
+
Cys
GCA
[ENA]
¡û
>W1911694917
QMBB01000017
Bacillota
Clostridium tetani TMB2 [QMBB]
133305
133379
+
Cys
GCA
[ENA]
¡û
>W1911694950
QMBC01000004
Bacillota
Clostridium tetani COR1 [QMBC]
105763
105837
+
Cys
GCA
[ENA]
¡û
>W1911695002
QMBD01000001
Bacillota
Clostridium tetani B4 [QMBD]
104251
104325
+
Cys
GCA
[ENA]
¡û
>W1911695119
QMBE01000029
Bacillota
Clostridium tetani 512-15 [QMBE]
22210
22284
+
Cys
GCA
[ENA]
¡û
>W1911695136
QMBF01000004
Bacillota
Clostridium tetani 329 [QMBF]
105763
105837
+
Cys
GCA
[ENA]
¡û
>W1911695197
QMBG01000003
Bacillota
Clostridium tetani 1240 [QMBG]
144770
144696
-
Cys
GCA
[ENA]
¡û
>W1911695285
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
260246
260172
-
Cys
GCA
[ENA]
¡û
>W1911695332
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
111100
111174
+
Cys
GCA
[ENA]
¡û
>W1911695384
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
150401
150475
+
Cys
GCA
[ENA]
¡û
>W1911695431
QMBK01000009
Bacillota
Clostridium tetani Strain 3 [QMBK]
150451
150525
+
Cys
GCA
[ENA]
¡û
>W1911695477
QMBL01000002
Bacillota
Clostridium tetani Harvard [QMBL]
150401
150475
+
Cys
GCA
[ENA]
¡û
>W1810052475
PDCI01000029
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
6370
6296
-
Cys
GCA
[ENA]
¡û
>W1810052518
PDCJ01000001
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
674029
673955
-
Cys
GCA
[ENA]
¡û
>W1810250518
PQCS01000005
Bacillota
Clostridium sp. 3-3 [PQCS]
58522
58596
+
Cys
GCA
[ENA]
¡û
>C151012337
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
147548
147622
+
Cys
GCA
[Ensembl]
¡û
>C151014182
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
508332
508258
-
Cys
GCA
[Ensembl]
¡û
>C151070160
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
1955032
1955106
+
Cys
GCA
[Ensembl]
¡û
>C151070239
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
1955034
1955108
+
Cys
GCA
[Ensembl]
¡û
>C151100899
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2405566
2405492
-
Cys
GCA
[Ensembl]
¡û
>W1511345187
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
138343
138269
-
Cys
GCA
[ENA]
¡û
>W1511345220
JRGH01000002
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
110143
110217
+
Cys
GCA
[ENA]
¡û
>W1511345274
JRGI01000001
Bacillota
Clostridium tetani ATCC 453 [JRGI]
110709
110783
+
Cys
GCA
[ENA]
¡û
>W1511345333
JRGJ01000006
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
138354
138280
-
Cys
GCA
[ENA]
¡û
>W1511388490
JSWC01000090
Bacillota
Clostridium tetani CN655 [JSWC]
136667
136593
-
Cys
GCA
[ENA]
¡û
>W1511388520
JSWD01000112
Bacillota
Clostridium tetani 184.08 [JSWD]
5864
5790
-
Cys
GCA
[ENA]
¡û
>W1511501423
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
1325900
1325826
-
Cys
GCA
[ENA]
¡û
>W1511506779
JXMR01000002
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
324054
324128
+
Cys
GCA
[ENA]
¡û
>W1511699120
LGII01000021
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
272491
272565
+
Cys
GCA
[ENA]
¡û
>W1511699199
LGIJ01000019
Bacillota
Clostridium botulinum ATCC 9564 [LGIJ]
189347
189273
-
Cys
GCA
[ENA]
¡û
>C161104331
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
1852455
1852381
-
Cys
GCA
-
¡û
>W1610101384
CYZR01000005
Bacillota
Sarcina ventriculi [CYZR]
3678
3604
-
Cys
GCA
[ENA]
¡û
>W1610101411
CYZR01000010
Bacillota
Sarcina ventriculi [CYZR]
3099
3173
+
Cys
GCA
[ENA]
¡û
>W1610112580
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
314816
314742
-
Cys
GCA
[ENA]
¡û
>W1610112617
CZLD01000018
Bacillota
Clostridium neonatale [CZLD]
669979
669905
-
Cys
GCA
[ENA]
¡û
>W1610501281
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
224850
224776
-
Cys
GCA
[ENA]
¡û
>W1610601323
LFOM01000001
Bacillota
Clostridium botulinum [LFOM]
160094
160168
+
Cys
GCA
[ENA]
¡û
>W1610602169
LFPB01000019
Bacillota
Clostridium botulinum [LFPB]
13011
13085
+
Cys
GCA
[ENA]
¡û
>W1610602193
LFPC01000004
Bacillota
Clostridium botulinum [LFPC]
112645
112719
+
Cys
GCA
[ENA]
¡û
>W1610602252
LFPD01000013
Bacillota
Clostridium botulinum [LFPD]
90675
90601
-
Cys
GCA
[ENA]
¡û
>W1610602319
LFPE01000007
Bacillota
Clostridium botulinum [LFPE]
95451
95525
+
Cys
GCA
[ENA]
¡û
>W1610602407
LFPG01000004
Bacillota
Clostridium botulinum [LFPG]
189321
189247
-
Cys
GCA
[ENA]
¡û
>W1610604264
LFQW01000030
Bacillota
Clostridium botulinum [LFQW]
16123
16049
-
Cys
GCA
[ENA]
¡û
>W1610604332
LFQX01000006
Bacillota
Clostridium botulinum [LFQX]
95466
95540
+
Cys
GCA
[ENA]
¡û
>W1710104139
CYZR01000005
Bacillota
Sarcina ventriculi [CYZR]
3678
3604
-
Cys
GCA
[ENA]
¡û
>W1710104166
CYZR01000010
Bacillota
Sarcina ventriculi [CYZR]
3099
3173
+
Cys
GCA
[ENA]
¡û
>W1710115284
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
314816
314742
-
Cys
GCA
[ENA]
¡û
>W1710115321
CZLD01000018
Bacillota
Clostridium neonatale [CZLD]
669979
669905
-
Cys
GCA
[ENA]
¡û
>W1710494751
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
224850
224776
-
Cys
GCA
[ENA]
¡û
>W1710558904
FOMG01000001
Bacillota
Clostridium uliginosum [FOMG]
166124
166198
+
Cys
GCA
[ENA]
¡û
>W1710600750
FUWT01000004
Bacillota
Clostridium tetani [FUWT]
110191
110265
+
Cys
GCA
[ENA]
¡û
>W1710722839
LFOM01000001
Bacillota
Clostridium botulinum [LFOM]
160094
160168
+
Cys
GCA
[ENA]
¡û
>W1710723685
LFPB01000019
Bacillota
Clostridium botulinum [LFPB]
13011
13085
+
Cys
GCA
[ENA]
¡û
>W1710723709
LFPC01000004
Bacillota
Clostridium botulinum [LFPC]
112645
112719
+
Cys
GCA
[ENA]
¡û
>W1710723768
LFPD01000013
Bacillota
Clostridium botulinum [LFPD]
90675
90601
-
Cys
GCA
[ENA]
¡û
>W1710723835
LFPE01000007
Bacillota
Clostridium botulinum [LFPE]
95451
95525
+
Cys
GCA
[ENA]
¡û
>W1710723923
LFPG01000004
Bacillota
Clostridium botulinum [LFPG]
189321
189247
-
Cys
GCA
[ENA]
¡û
>W1710725780
LFQW01000030
Bacillota
Clostridium botulinum [LFQW]
16123
16049
-
Cys
GCA
[ENA]
¡û
>W1710725848
LFQX01000006
Bacillota
Clostridium botulinum [LFQX]
95466
95540
+
Cys
GCA
[ENA]
¡û
>W1710754765
LHUM01000042
Bacillota
Clostridium botulinum [LHUM]
189127
189053
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK