This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338555 (65 seq.)
>W131092185
AOIF01000161
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
17457
17531
+
Arg
CCT
[ENA]
¡û
>W1711294016
LZZB01000044
Bacillota
Clostridium beijerinckii [LZZB]
11762
11836
+
Arg
CCT
[ENA]
¡û
>W1711294092
LZZC01000076
Bacillota
Clostridium beijerinckii [LZZC]
22070
21996
-
Arg
CCT
[ENA]
¡û
>W1711294118
LZZD01000041
Bacillota
Clostridium beijerinckii [LZZD]
33377
33303
-
Arg
CCT
[ENA]
¡û
>W1711294165
LZZE01000039
Bacillota
Clostridium beijerinckii [LZZE]
17016
17090
+
Arg
CCT
[ENA]
¡û
>W1711294216
LZZF01000055
Bacillota
Clostridium beijerinckii [LZZF]
11597
11671
+
Arg
CCT
[ENA]
¡û
>W1711294244
LZZG01000042
Bacillota
Clostridium beijerinckii [LZZG]
17100
17174
+
Arg
CCT
[ENA]
¡û
>W1711294289
LZZH01000040
Bacillota
Clostridium beijerinckii [LZZH]
24720
24646
-
Arg
CCT
[ENA]
¡û
>W1711294311
LZZI01000025
Bacillota
Clostridium beijerinckii [LZZI]
36121
36047
-
Arg
CCT
[ENA]
¡û
>W1711294398
LZZJ01000228
Bacillota
Clostridium beijerinckii [LZZJ]
17215
17289
+
Arg
CCT
[ENA]
¡û
>W1711294476
LZZK01000070
Bacillota
Clostridium beijerinckii [LZZK]
17482
17556
+
Arg
CCT
[ENA]
¡û
>W1711294499
LZZL01000046
Bacillota
Clostridium sp. BL-8 [LZZL]
18809
18883
+
Arg
CCT
[ENA]
¡û
>W1711294559
LZZM01000222
Bacillota
Clostridium puniceum [LZZM]
20826
20898
+
Arg
CCT
[ENA]
¡û
>W1711320465
MBAF01000037
Bacillota
Clostridium beijerinckii [MBAF]
17405
17479
+
Arg
CCT
[ENA]
¡û
>W131156906
AQQG01000175
Bacillota
Clostridium diolis DSM 15410 [AQQG]
17232
17306
+
Arg
CCT
[ENA]
¡û
>W1711794364
MWMH01000013
Bacillota
Clostridium beijerinckii [MWMH]
116897
116823
-
Arg
CCT
[ENA]
¡û
>W1711902842
MZGT01000005
Bacillota
Clostridium chromiireducens [MZGT]
105459
105385
-
Arg
CCT
[ENA]
¡û
>W1712096555
NHZR01000012
Bacillota
Clostridium diolis [NHZR]
22373
22447
+
Arg
CCT
[ENA]
¡û
>C171045694
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
6088610
6088536
-
Arg
CCT
-
¡û
>C171045854
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
6033990
6033916
-
Arg
CCT
-
¡û
>C005107
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
5911142
5911068
-
Arg
CCT
[Ensembl]
¡û
>w011493
AALO01000036
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
17835
17911
+
Arg
CCT
[ENA]
¡û
>WENV180124115
OASX01002165
[OASX] human gut metagenome; faeces
5130
5056
-
Arg
CCT
[ENA]
¢þ
>WENV180129296
OATC01000420
[OATC] human gut metagenome; faeces
2466
2540
+
Arg
CCT
[ENA]
¢þ
>WENV180153086
OAUR01000618
[OAUR] human gut metagenome; faeces
2526
2600
+
Arg
CCT
[ENA]
¢þ
>WENV180232346
OBCO01000317
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
32539
32465
-
Arg
CCT
[ENA]
¢þ
>WENV180233306
OBCP01000319
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
32539
32465
-
Arg
CCT
[ENA]
¢þ
>W141039516
ALXI01000010
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
22274
22348
+
Arg
CCT
[ENA]
¡û
>WENV180444318
OBWZ01000932
[OBWZ] human gut metagenome; faeces
3203
3129
-
Arg
CCT
[ENA]
¢þ
>WENV180457598
OBXU01009048
[OBXU] human gut metagenome; faeces
211
285
+
Arg
CCT
[ENA]
¢þ
>WENV180504973
OCAO01000342
[OCAO] human gut metagenome; faeces
12830
12904
+
Arg
CCT
[ENA]
¢þ
>WENV180569820
OCLR01000511
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
2776
2850
+
Arg
CCT
[ENA]
¢þ
>WENV180570663
OCLS01000367
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
17042
17116
+
Arg
CCT
[ENA]
¢þ
>WENV180571680
OCLT01000308
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
32539
32465
-
Arg
CCT
[ENA]
¢þ
>WENV180573922
OCLW01000313
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
32539
32465
-
Arg
CCT
[ENA]
¢þ
>WENV180639984
OCRL01000299
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
32539
32465
-
Arg
CCT
[ENA]
¢þ
>WENV180640949
OCRM01000343
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
27233
27159
-
Arg
CCT
[ENA]
¢þ
>W141083115
AUPH01000619
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
1010
936
-
Arg
CCT
[ENA]
¡û
>W141200269
AYXR01000017
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
94808
94734
-
Arg
CCT
[ENA]
¡û
>WENV182613908
OJKA01032238
[OJKA] metagenome; faeces
235
161
-
Arg
CCT
[ENA]
¢þ
>WENV182617318
OJKD01000740
[OJKD] metagenome; faeces
2684
2758
+
Arg
CCT
[ENA]
¢þ
>WENV182835036
OKFJ01001646
[OKFJ] human gut metagenome; human gut
1143
1217
+
Arg
CCT
[ENA]
¢þ
>WENV182839485
OKHE01000921
[OKHE] human gut metagenome; human gut
889
815
-
Arg
CCT
[ENA]
¢þ
>WENV182852609
OKLZ01000618
[OKLZ] human gut metagenome; human gut
235
161
-
Arg
CCT
[ENA]
¢þ
>WENV182865597
OKQK01001726
[OKQK] human gut metagenome; human gut
2406
2480
+
Arg
CCT
[ENA]
¢þ
>C181176772
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
887216
887142
-
Arg
CCT
-
¡û
>C181203672
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6279205
6279131
-
Arg
CCT
-
¡û
>W141560238
JHXK01000019
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
19119
19193
+
Arg
CCT
[ENA]
¡û
>W1910004346
AUUU01000028
Bacillota
Clostridium sp. LS [AUUU]
104828
104754
-
Arg
CCT
[ENA]
¡û
>W1911766228
QXDJ01000009
Bacillota
Clostridium chromiireducens C1 [QXDJ]
113338
113264
-
Arg
CCT
[ENA]
¡û
>W1810052482
PDCI01000036
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
52568
52494
-
Arg
CCT
[ENA]
¡û
>W1810052581
PDCJ01000007
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
25968
26042
+
Arg
CCT
[ENA]
¡û
>W1810147473
PIQP01000009
Bacillota
Clostridium beijerinckii WB [PIQP]
122219
122145
-
Arg
CCT
[ENA]
¡û
>W1810250494
PQCR01000052
Bacillota
Clostridium sp. 2-1 [PQCR]
32829
32755
-
Arg
CCT
[ENA]
¡û
>W1810271480
PRKY01000035
Bacillota
Clostridium diolis WST [PRKY]
17397
17471
+
Arg
CCT
[ENA]
¡û
>C151012390
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5909560
5909486
-
Arg
CCT
[Ensembl]
¡û
>C151088292
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
97468
97542
+
Arg
CCT
-
¡û
>W11176318
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
130070
129996
-
Arg
CCT
[ENA]
¡û
>C161023499
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6375884
6375810
-
Arg
CCT
[Ensembl]
¡û
>W121102353
AKWA01000053
Bacillota
Clostridium beijerinckii G117 [AKWA]
4586
4512
-
Arg
CCT
[ENA]
¡û
>W1610112558
CZLD01000012
Bacillota
Clostridium neonatale [CZLD]
52498
52424
-
Arg
CCT
[ENA]
¡û
>C131012950
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
6416908
6416834
-
Arg
CCT
[Ensembl]
¡û
>W1611062488
MBAF01000037
Bacillota
Clostridium beijerinckii [MBAF]
17405
17479
+
Arg
CCT
[ENA]
¡û
>WENV082814
BAAW01001760
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
713
789
+
Arg
CCT
[ENA]
>W1710115262
CZLD01000012
Bacillota
Clostridium neonatale [CZLD]
52498
52424
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK