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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338556 (37 seq.)
>W1711294013
LZZB01000012
Bacillota
Clostridium beijerinckii [LZZB]
51739
51813
+
Gly
CCC
[ENA]
¡û
>W1711294081
LZZC01000047
Bacillota
Clostridium beijerinckii [LZZC]
39773
39847
+
Gly
CCC
[ENA]
¡û
>W1711294112
LZZD01000014
Bacillota
Clostridium beijerinckii [LZZD]
32711
32637
-
Gly
CCC
[ENA]
¡û
>W1711294160
LZZE01000015
Bacillota
Clostridium beijerinckii [LZZE]
32642
32568
-
Gly
CCC
[ENA]
¡û
>W1711294213
LZZF01000029
Bacillota
Clostridium beijerinckii [LZZF]
31031
30957
-
Gly
CCC
[ENA]
¡û
>W1711294233
LZZG01000015
Bacillota
Clostridium beijerinckii [LZZG]
29252
29178
-
Gly
CCC
[ENA]
¡û
>W1711294286
LZZH01000012
Bacillota
Clostridium beijerinckii [LZZH]
55616
55690
+
Gly
CCC
[ENA]
¡û
>W1711294314
LZZI01000029
Bacillota
Clostridium beijerinckii [LZZI]
8772
8846
+
Gly
CCC
[ENA]
¡û
>W1711294368
LZZJ01000077
Bacillota
Clostridium beijerinckii [LZZJ]
55436
55510
+
Gly
CCC
[ENA]
¡û
>W1711294408
LZZK01000001
Bacillota
Clostridium beijerinckii [LZZK]
169171
169245
+
Gly
CCC
[ENA]
¡û
>W1711320450
MBAF01000021
Bacillota
Clostridium beijerinckii [MBAF]
250381
250307
-
Gly
CCC
[ENA]
¡û
>W131156888
AQQG01000126
Bacillota
Clostridium diolis DSM 15410 [AQQG]
32825
32751
-
Gly
CCC
[ENA]
¡û
>W1711794361
MWMH01000008
Bacillota
Clostridium beijerinckii [MWMH]
150052
150126
+
Gly
CCC
[ENA]
¡û
>W1712096554
NHZR01000011
Bacillota
Clostridium diolis [NHZR]
109613
109687
+
Gly
CCC
[ENA]
¡û
>C171045818
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
315137
315211
+
Gly
CCC
-
¡û
>C005057
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
355049
355123
+
Gly
CCC
[Ensembl]
¡û
>w011488
AALO01000021
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
29136
29212
+
Gly
CCC
[ENA]
¡û
>WENV180232168
OBCO01000158
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
95341
95415
+
Gly
CCC
[ENA]
¢þ
>WENV180233028
OBCP01000068
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
207639
207713
+
Gly
CCC
[ENA]
¢þ
>WENV180569569
OCLR01000184
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
70465
70539
+
Gly
CCC
[ENA]
¢þ
>WENV180570473
OCLS01000143
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
95341
95415
+
Gly
CCC
[ENA]
¢þ
>WENV180571386
OCLT01000072
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
207695
207769
+
Gly
CCC
[ENA]
¢þ
>WENV180573633
OCLW01000069
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
207695
207769
+
Gly
CCC
[ENA]
¢þ
>WENV180639700
OCRL01000074
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
207695
207769
+
Gly
CCC
[ENA]
¢þ
>WENV180640822
OCRM01000212
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
58812
58886
+
Gly
CCC
[ENA]
¢þ
>W141083123
AUPH01001220
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
1889
1963
+
Gly
CCC
[ENA]
¡û
>W141200261
AYXR01000015
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
2891
2817
-
Gly
CCC
[ENA]
¡û
>C181203622
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
315714
315788
+
Gly
CCC
-
¡û
>W141560236
JHXK01000018
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
74288
74214
-
Gly
CCC
[ENA]
¡û
>W1810147500
PIQP01000027
Bacillota
Clostridium beijerinckii WB [PIQP]
8738
8664
-
Gly
CCC
[ENA]
¡û
>W1810250486
PQCR01000011
Bacillota
Clostridium sp. 2-1 [PQCR]
31326
31252
-
Gly
CCC
[ENA]
¡û
>W1810271461
PRKY01000012
Bacillota
Clostridium diolis WST [PRKY]
102675
102601
-
Gly
CCC
[ENA]
¡û
>C151012340
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
355049
355123
+
Gly
CCC
[Ensembl]
¡û
>C151088336
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5883505
5883431
-
Gly
CCC
-
¡û
>C161023445
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
316387
316461
+
Gly
CCC
[Ensembl]
¡û
>W121102379
AKWA01000085
Bacillota
Clostridium beijerinckii G117 [AKWA]
8738
8663
-
Gly
CCC
[ENA]
¡û
>W1611062473
MBAF01000021
Bacillota
Clostridium beijerinckii [MBAF]
250381
250307
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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