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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338563 (77 seq.)
>W1711083918
LSVI01000174
Bacillota
Lactobacillus helveticus [LSVI]
1447
1520
+
Gln
TTG
[ENA]
¡û
>W1711083980
LSVJ01000142
Bacillota
Lactobacillus helveticus [LSVJ]
3844
3917
+
Gln
TTG
[ENA]
¡û
>W1711092326
LTDX01000072
Bacillota
Lactobacillus acetotolerans [LTDX]
9693
9619
-
Gln
TTG
[ENA]
¡û
>W1711632599
MPSU01000083
Bacillota
Lactobacillus helveticus [MPSU]
255
328
+
Gln
TTG
[ENA]
¡û
>C171051876
CP016827
Bacillota
Lactobacillus helveticus D76 [CP016827]
994439
994366
-
Gln
TTG
-
¡û
>C171102960
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1614325
1614252
-
Gln
TTG
-
¡û
>WENV181201813
OERP01011560
[OERP] metagenome; Caecal content
566
639
+
Gln
TTG
[ENA]
¢þ
>WENV181202868
OERS01009311
[OERS] metagenome; Caecal content
398
469
+
Gln
TTG
[ENA]
¢þ
>C08006120
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
458632
458705
+
Gln
TTG
[Ensembl]
¡û
>W141255473
CBUH010000201
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
11150
11077
-
Gln
TTG
[ENA]
¡û
>W141255572
CBUK010000121
Bacillota
Lactobacillus helveticus CIRM-BIA 951 [CBUK]
9442
9369
-
Gln
TTG
[ENA]
¡û
>W141255601
CBUL010000055
Bacillota
Lactobacillus helveticus CIRM-BIA 104 [CBUL]
9350
9277
-
Gln
TTG
[ENA]
¡û
>W141255672
CBUM010000166
Bacillota
Lactobacillus helveticus CIRM-BIA 103 [CBUM]
9291
9218
-
Gln
TTG
[ENA]
¡û
>W141255712
CBUN010000040
Bacillota
Lactobacillus helveticus CIRM-BIA 101 [CBUN]
585
658
+
Gln
TTG
[ENA]
¡û
>C181017317
CP015444
Bacillota
Lactobacillus helveticus FAM8627 [CP015444]
1394742
1394669
-
Gln
TTG
-
¡û
>C181017455
CP015496
Bacillota
Lactobacillus helveticus FAM8105 [CP015496]
451469
451542
+
Gln
TTG
-
¡û
>C181017517
CP015498
Bacillota
Lactobacillus helveticus FAM22155 [CP015498]
482465
482538
+
Gln
TTG
-
¡û
>C181027691
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
672772
672699
-
Gln
TTG
-
¡û
>C191014834
CP017982
Bacillota
Lactobacillus helveticus LH99 [CP017982]
426242
426315
+
Gln
TTG
-
¡û
>C191016299
CP019581
Bacillota
Lactobacillus helveticus LH5 [CP019581]
1947377
1947450
+
Gln
TTG
-
¡û
>C191073270
CP031016
Bacillota
Lactobacillus helveticus [CP031016]
480850
480923
+
Gln
TTG
-
¡û
>C191073338
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
482506
482579
+
Gln
TTG
-
¡û
>C191138840
CP035307
Bacillota
Lactobacillus helveticus IDCC3801 [CP035307]
1525923
1525850
-
Gln
TTG
-
¡û
>W09128132
ACLM01000229
Bacillota
Lactobacillus helveticus DSM 20075 [ACLM]
255
328
+
Gln
TTG
[ENA]
¡û
>W1910922988
NIGM01000103
Bacillota
Lactobacillus helveticus M92 [NIGM]
3777
3850
+
Gln
TTG
[ENA]
¡û
>W1910923382
NIGX01000053
Bacillota
Lactobacillus helveticus LMG S-29187 [NIGX]
1388
1461
+
Gln
TTG
[ENA]
¡û
>W1911218702
NRQX01000259
Bacillota
Lactobacillus helveticus UC1156 [NRQX]
9441
9368
-
Gln
TTG
[ENA]
¡û
>W1911531933
OGTV01000037
Bacillota
Lactobacillus helveticus [OGTV]
9432
9359
-
Gln
TTG
[ENA]
¡û
>W1911531988
OGTV02000037
Bacillota
Lactobacillus helveticus [OGTV]
9432
9359
-
Gln
TTG
[ENA]
¡û
>W1911702137
QNXC01000066
Bacillota
Lactobacillus helveticus TJA10 [QNXC]
573
646
+
Gln
TTG
[ENA]
¡û
>W1810177293
PJRL01000024
Bacillota
Lactobacillus helveticus ATCC 12046 [PJRL]
9332
9259
-
Gln
TTG
[ENA]
¡û
>W1810473227
QAHI01000061
Bacillota
Lactobacillus helveticus DS21_8 [QAHI]
9384
9311
-
Gln
TTG
[ENA]
¡û
>W1810473280
QAHJ01000064
Bacillota
Lactobacillus helveticus DS12_8 [QAHJ]
9384
9311
-
Gln
TTG
[ENA]
¡û
>W1810489060
QAZT01000060
Bacillota
Lactobacillus helveticus DS18_8 [QAZT]
1131
1204
+
Gln
TTG
[ENA]
¡û
>W1810489116
QAZU01000066
Bacillota
Lactobacillus helveticus DS3_8 [QAZU]
382
455
+
Gln
TTG
[ENA]
¡û
>W1810665854
QJOG01000046
Bacillota
Lactobacillus helveticus FAM22157 [QJOG]
9482
9409
-
Gln
TTG
[ENA]
¡û
>W1810665899
QJOH01000054
Bacillota
Lactobacillus helveticus FAM22076 [QJOH]
1443
1516
+
Gln
TTG
[ENA]
¡û
>W1810665974
QJOI01000056
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
9426
9353
-
Gln
TTG
[ENA]
¡û
>W1810666030
QJOJ01000054
Bacillota
Lactobacillus helveticus FAM1450 [QJOJ]
9332
9259
-
Gln
TTG
[ENA]
¡û
>W1810666095
QJOK01000047
Bacillota
Lactobacillus helveticus FAM1213 [QJOK]
9344
9271
-
Gln
TTG
[ENA]
¡û
>W1810666139
QJOL01000058
Bacillota
Lactobacillus helveticus FAM1182 [QJOL]
1443
1516
+
Gln
TTG
[ENA]
¡û
>W1810666206
QJOM01000042
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810666273
QJON01000049
Bacillota
Lactobacillus helveticus FAM19191 [QJON]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810666337
QJOO01000049
Bacillota
Lactobacillus helveticus FAM19188 [QJOO]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810666394
QJOP01000039
Bacillota
Lactobacillus helveticus FAM14499 [QJOP]
9200
9127
-
Gln
TTG
[ENA]
¡û
>W1810666458
QJOQ01000050
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810666519
QJOR01000048
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810666579
QJOS01000052
Bacillota
Lactobacillus helveticus FAM8106 [QJOS]
9311
9238
-
Gln
TTG
[ENA]
¡û
>W1810679612
QKQX01000049
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
9311
9238
-
Gln
TTG
[ENA]
¡û
>C151003268
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
480940
481014
+
Gln
TTG
[Ensembl]
¡û
>C151003429
CP002427
Bacillota
Lactobacillus helveticus H9 [CP002427]
1540713
1540640
-
Gln
TTG
[Ensembl]
¡û
>C151061704
CP009907
Bacillota
Lactobacillus helveticus KLDS1.8701 [CP009907]
643014
643087
+
Gln
TTG
[Ensembl]
¡û
>C151081846
CP011386
Bacillota
Lactobacillus helveticus MB2-1 [CP011386]
422034
422107
+
Gln
TTG
[Ensembl]
¡û
>C11112890
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
436495
436568
+
Gln
TTG
[Ensembl]
¡û
>W1511354465
JRQG01000047
Bacillota
Lactobacillus helveticus ATCC 10386 [JRQG]
493
566
+
Gln
TTG
[ENA]
¡û
>W1511355776
JRTS01000046
Bacillota
Lactobacillus helveticus M3 [JRTS]
1389
1462
+
Gln
TTG
[ENA]
¡û
>W11138530
AEIR01000004
Bacillota
Lactobacillus helveticus R0052 [AEIR]
243029
242956
-
Gln
TTG
[ENA]
¡û
>W11152547
AEYL01000492
Bacillota
Lactobacillus helveticus MTCC 5463 [AEYL]
3123
3196
+
Gln
TTG
[ENA]
¡û
>C161041482
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
450048
450121
+
Gln
TTG
-
¡û
>W1610031792
AYZC01000047
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
9802
9728
-
Gln
TTG
[ENA]
¡û
>W1610032845
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3265
3338
+
Gln
TTG
[ENA]
¡û
>W1610035325
AZEK01000060
Bacillota
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 [AZEK]
9308
9235
-
Gln
TTG
[ENA]
¡û
>W1610045762
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9785
9711
-
Gln
TTG
[ENA]
¡û
>C131001263
CP002081
Bacillota
Lactobacillus helveticus CNRZ32 [CP002081]
1886335
1886262
-
Gln
TTG
[Ensembl]
¡û
>C131007122
CP003799
Bacillota
Lactobacillus helveticus R0052 [CP003799]
464334
464407
+
Gln
TTG
[Ensembl]
¡û
>W1610514758
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
792670
792596
-
Gln
TTG
[ENA]
¡û
>W1610529821
JQCJ01000069
Bacillota
Lactobacillus helveticus [JQCJ]
9266
9193
-
Gln
TTG
[ENA]
¡û
>W1610642769
LJDA01000035
Bacillota
Lactobacillus crispatus [LJDA]
9189
9116
-
Gln
TTG
[ENA]
¡û
>W1610922671
LSVI01000174
Bacillota
Lactobacillus helveticus [LSVI]
1447
1520
+
Gln
TTG
[ENA]
¡û
>W1610922733
LSVJ01000142
Bacillota
Lactobacillus helveticus [LSVJ]
3844
3917
+
Gln
TTG
[ENA]
¡û
>W1610926364
LTDX01000072
Bacillota
Lactobacillus acetotolerans [LTDX]
9693
9619
-
Gln
TTG
[ENA]
¡û
>W1710028719
AYZC01000047
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
9802
9728
-
Gln
TTG
[ENA]
¡û
>W1710030176
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3265
3338
+
Gln
TTG
[ENA]
¡û
>W1710042603
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9785
9711
-
Gln
TTG
[ENA]
¡û
>W1710500448
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
792670
792596
-
Gln
TTG
[ENA]
¡û
>W1710559313
FOMN01000006
Bacillota
Lactobacillus bombicola [FOMN]
6330
6404
+
Gln
TTG
[ENA]
¡û
>W1710631411
JQCJ01000069
Bacillota
Lactobacillus helveticus [JQCJ]
9266
9193
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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