This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338581 (33 seq.)
>W1711170187
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
107168
107094
-
Glu
CTC
[ENA]
¡û
>WENV180014387
FQKF010002080
[FQKF] soil metagenome; Soil
28207
28281
+
Glu
CTC
[ENA]
¢þ
>WENV181409073
OGCH01045002
[OGCH] hot springs metagenome; hot springs
139
213
+
Glu
CTC
[ENA]
¢þ
>C08011021
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
835926
835855
-
Glu
CTC
[Ensembl]
¡û
>WENV170675725
LDZQ01000381
[LDZQ] terrestrial metagenome; oil reservoir sample I2
43727
43653
-
Glu
CTC
[ENA]
¢þ
>WENV170676051
LDZR01000644
[LDZR] terrestrial metagenome; oil reservoir sample K2
3538
3612
+
Glu
CTC
[ENA]
¢þ
>WENV170676445
LDZR01002686
[LDZR] terrestrial metagenome; oil reservoir sample K2
43727
43653
-
Glu
CTC
[ENA]
¢þ
>WENV170676949
LDZS01003355
[LDZS] terrestrial metagenome; oil reservoir sample K3
1711
1785
+
Glu
CTC
[ENA]
¢þ
>WENV170677239
LDZT01004213
[LDZT] terrestrial metagenome; oil reservoir sample SB1
71
-1
-
Glu
CTC
[ENA]
¢þ
>WENV170779383
LZQN01004270
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
88
162
+
Glu
CTC
[ENA]
¢þ
>C181217965
LS974202
Thermotogota
Mesotoga infera [LS974202]
149991
149917
-
Glu
CTC
-
¡û
>W141561632
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
299465
299539
+
Glu
CTC
[ENA]
¡û
>W141778845
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
126265
126191
-
Glu
CTC
[ENA]
¡û
>C141000357
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
830570
830496
-
Glu
CTC
-
¡û
>C141000387
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
2023819
2023893
+
Glu
CTC
-
¡û
>C09106804
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
2229717
2229643
-
Glu
CTC
[Ensembl]
¡û
>C09110474
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
1225968
1225894
-
Glu
CTC
[Ensembl]
¡û
>C151001637
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1078168
1078242
+
Glu
CTC
-
¡û
>C151001689
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1904978
1905052
+
Glu
CTC
-
¡û
>C11123161
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
1063988
1063914
-
Glu
CTC
[Ensembl]
¡û
>C121009809
CP003257
Thermotogota
Marinitoga piezophila KA3 [CP003257]
345684
345610
-
Glu
CTC
[Ensembl]
¡û
>C161005100
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
2008415
2008341
-
Glu
CTC
[Ensembl]
¡û
>C161071303
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
322072
321998
-
Glu
CTC
[Ensembl]
¡û
>W1610032674
AZAY01000005
Thermotogota
Marinitoga sp. 1197 [AZAY]
65921
65847
-
Glu
CTC
[ENA]
¡û
>W1610612527
LGEV01000014
Thermotogota
Thermotoga sp. 50_64 [LGEV]
43727
43653
-
Glu
CTC
[ENA]
¡û
>W1610612871
LGFF01000023
Thermotogota
Pseudothermotoga lettingae [LGFF]
3538
3612
+
Glu
CTC
[ENA]
¡û
>W1610612950
LGFH01000010
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
43727
43653
-
Glu
CTC
[ENA]
¡û
>W1710029419
AZAY01000005
Thermotogota
Marinitoga sp. 1197 [AZAY]
65921
65847
-
Glu
CTC
[ENA]
¡û
>W1710517614
FNDL01000029
Thermotogota
Fervidobacterium changbaicum [FNDL]
21225
21299
+
Glu
CTC
[ENA]
¡û
>W1710661052
JYCZ01000012
Thermotogota
Thermosipho melanesiensis [JYCZ]
68507
68581
+
Glu
CTC
[ENA]
¡û
>W1710733925
LGEV01000014
Thermotogota
Thermotoga sp. 50_64 [LGEV]
43727
43653
-
Glu
CTC
[ENA]
¡û
>W1710734153
LGFF01000023
Thermotogota
Pseudothermotoga lettingae [LGFF]
3538
3612
+
Glu
CTC
[ENA]
¡û
>W1710734232
LGFH01000010
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
43727
43653
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK