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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338623 (48 seq.)
>C025763
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
353918
353847
-
Gly
TCC
[Ensembl]
¡û
>W141005539
AGDV01000006
Spirochaetota
Treponema denticola H-22 [AGDV]
46235
46306
+
Gly
TCC
[ENA]
¡û
>W141005781
AGEA01000023
Spirochaetota
Treponema denticola SP37 [AGEA]
80505
80576
+
Gly
TCC
[ENA]
¡û
>W141055950
AOTN01000176
Spirochaetota
Treponema pedis str. B 683 [AOTN]
11125
11196
+
Gly
TCC
[ENA]
¡û
>W141056031
AOTP01000094
Spirochaetota
Treponema pedis isoE1186 [AOTP]
20725
20654
-
Gly
TCC
[ENA]
¡û
>W141064675
AQCF01000027
Spirochaetota
Treponema phagedenis 4A [AQCF]
443
514
+
Gly
TCC
[ENA]
¡û
>WENV180789290
ODIS01399975
[ODIS] human metagenome; G_DNA_Supragingival plaque
109
180
+
Gly
TCC
[ENA]
¢þ
>WENV181050338
ODYD01013903
[ODYD] human metagenome; G_DNA_Supragingival plaque
2087
2016
-
Gly
TCC
[ENA]
¢þ
>WENV183704403
PDWI01000202
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
82484
82413
-
Gly
TCC
[ENA]
¢þ
>WENV183706655
PDWI01005018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
90
19
-
Gly
TCC
[ENA]
¢þ
>WENV183709421
PDWI01028079
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3517
3588
+
Gly
TCC
[ENA]
¢þ
>WENV183713439
PDWI01138741
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1606
1677
+
Gly
TCC
[ENA]
¢þ
>WENV183714234
PDWI01174384
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1428
1357
-
Gly
TCC
[ENA]
¢þ
>WENV183714829
PDWI01205773
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10
81
+
Gly
TCC
[ENA]
¢þ
>WENV183715136
PDWI01223382
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23
94
+
Gly
TCC
[ENA]
¢þ
>WENV183715159
PDWI01224610
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
77
6
-
Gly
TCC
[ENA]
¢þ
>WENV183715300
PDWI01231751
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10
81
+
Gly
TCC
[ENA]
¢þ
>WENV183715400
PDWI01239098
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
115
186
+
Gly
TCC
[ENA]
¢þ
>WENV183717973
PDWJ01002084
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
12467
12538
+
Gly
TCC
[ENA]
¢þ
>WENV183718846
PDWJ01006959
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2040
2111
+
Gly
TCC
[ENA]
¢þ
>WENV183721129
PDWJ01056139
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9
80
+
Gly
TCC
[ENA]
¢þ
>WENV183721545
PDWJ01074682
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
593
522
-
Gly
TCC
[ENA]
¢þ
>C191179262
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
355114
355041
-
Gly
TCC
-
¡û
>C151004511
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
355160
355087
-
Gly
TCC
[Ensembl]
¡û
>C151046046
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
2309516
2309445
-
Gly
TCC
[Ensembl]
¡û
>C10113612
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
355143
355070
-
Gly
TCC
[Ensembl]
¡û
>C10113656
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
355099
355026
-
Gly
TCC
[Ensembl]
¡û
>W11115152
ADEC01000015
Spirochaetota
Treponema denticola F0402 [ADEC]
50577
50648
+
Gly
TCC
[ENA]
¡û
>C11122922
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
350711
350638
-
Gly
TCC
[Ensembl]
¡û
>C121002430
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
355272
355199
-
Gly
TCC
[Ensembl]
¡û
>C121002475
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
355606
355533
-
Gly
TCC
[Ensembl]
¡û
>C121002520
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
355568
355495
-
Gly
TCC
[Ensembl]
¡û
>C121006125
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
355131
355058
-
Gly
TCC
[Ensembl]
¡û
>C161017283
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
353329
353256
-
Gly
TCC
[Ensembl]
¡û
>C161028048
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
355045
354972
-
Gly
TCC
-
¡û
>C161028092
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
355045
354972
-
Gly
TCC
-
¡û
>C161028136
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
353939
353866
-
Gly
TCC
-
¡û
>C161028180
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
354985
354912
-
Gly
TCC
-
¡û
>C161028224
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
355119
355046
-
Gly
TCC
-
¡û
>C161028268
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
355139
355066
-
Gly
TCC
-
¡û
>C161028313
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
355114
355041
-
Gly
TCC
-
¡û
>C161028357
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
355112
355039
-
Gly
TCC
-
¡û
>C161028401
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
355112
355039
-
Gly
TCC
-
¡û
>C161084214
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
218732
218659
-
Gly
TCC
-
¡û
>C131001887
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
355104
355031
-
Gly
TCC
[Ensembl]
¡û
>C131009518
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
355616
355543
-
Gly
TCC
[Ensembl]
¡û
>C131011379
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
355077
355004
-
Gly
TCC
-
¡û
>C131011423
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
355116
355043
-
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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