This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338670 (36 seq.)
>W1710792789
LJOP01000053
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
128078
128149
+
Cys
GCA
[ENA]
¡û
>W1710792847
LJOQ01000087
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
62746
62675
-
Cys
GCA
[ENA]
¡û
>W1710792859
LJOS01000004
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
47889
47960
+
Cys
GCA
[ENA]
¡û
>W1710792930
LJOU01000101
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
5247
5318
+
Cys
GCA
[ENA]
¡û
>W1710792951
LJOV01000054
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
6972
6901
-
Cys
GCA
[ENA]
¡û
>W1710792998
LJOW01000021
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27357
27428
+
Cys
GCA
[ENA]
¡û
>W1710793068
LJOX01000033
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
21489
21560
+
Cys
GCA
[ENA]
¡û
>W1710793104
LJOY01000013
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
45061
45132
+
Cys
GCA
[ENA]
¡û
>W1710882476
LMTZ01000122
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
40556
40485
-
Cys
GCA
[ENA]
¡û
>W131058350
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1694862
1694791
-
Cys
GCA
[ENA]
¡û
>W1711092448
LTEC01000024
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48913
48984
+
Cys
GCA
[ENA]
¡û
>W141022934
AJWF01000012
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
1142233
1142162
-
Cys
GCA
[ENA]
¡û
>W141038407
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3733074
3733145
+
Cys
GCA
[ENA]
¡û
>W141038748
ALWD01000064
Cyanobacteriota
[Scytonema hofmanni] UTEX B 1581 UTEX 2349 [ALWD]
34787
34858
+
Cys
GCA
[ENA]
¡û
>W141221417
AZYY01000118
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
34543
34614
+
Cys
GCA
[ENA]
¡û
>WENV170022622
BCQK01027243
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
553
624
+
Cys
GCA
[ENA]
¢þ
>C181004911
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
244847
244776
-
Cys
GCA
-
¡û
>C181004966
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
23591
23662
+
Cys
GCA
-
¡û
>W1911278535
NTFS01000131
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
101
172
+
Cys
GCA
[ENA]
¡û
>W1911581766
PGEM01000024
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
14221
14150
-
Cys
GCA
[ENA]
¡û
>C151004163
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
1920579
1920650
+
Cys
GCA
[Ensembl]
¡û
>C151082946
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
1127414
1127485
+
Cys
GCA
-
¡û
>C131004197
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1892982
1892911
-
Cys
GCA
[Ensembl]
¡û
>C131004221
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
6109346
6109417
+
Cys
GCA
[Ensembl]
¡û
>C131004541
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
1189923
1189851
-
Cys
GCA
[Ensembl]
¡û
>C131004705
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
4768553
4768624
+
Cys
GCA
[Ensembl]
¡û
>W1610656714
LJOP01000053
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
128078
128149
+
Cys
GCA
[ENA]
¡û
>W1610656772
LJOQ01000087
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
62746
62675
-
Cys
GCA
[ENA]
¡û
>W1610656823
LJOS01000004
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
47889
47960
+
Cys
GCA
[ENA]
¡û
>W1610656934
LJOU01000101
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
5247
5318
+
Cys
GCA
[ENA]
¡û
>W1610656955
LJOV01000054
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
6972
6901
-
Cys
GCA
[ENA]
¡û
>W1610657002
LJOW01000021
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
27357
27428
+
Cys
GCA
[ENA]
¡û
>W1610657072
LJOX01000033
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
21489
21560
+
Cys
GCA
[ENA]
¡û
>W1610657108
LJOY01000013
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
45061
45132
+
Cys
GCA
[ENA]
¡û
>W1610744402
LMTZ01000122
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
40556
40485
-
Cys
GCA
[ENA]
¡û
>W1610926486
LTEC01000024
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48913
48984
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK