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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338673 (63 seq.)
>W1710801444
LJWX01000001
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
582932
583006
+
Thr
GGT
[ENA]
¡û
>C014740
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
451760
451834
+
Thr
GGT
[Ensembl]
¡û
>C014794
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
1913179
1913105
-
Thr
GGT
[Ensembl]
¡û
>WENV180284197
OBID01020592
[OBID] metagenome; sludge
47
121
+
Thr
GGT
[ENA]
¢þ
>WENV180296724
OBJA01002001
[OBJA] soil metagenome; sediment, water from around vicinity
185
111
-
Thr
GGT
[ENA]
¢þ
>WENV180298226
OBJA01226790
[OBJA] soil metagenome; sediment, water from around vicinity
203
277
+
Thr
GGT
[ENA]
¢þ
>w002404
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
451760
451836
+
Thr
GGT
[ENA]
¡û
>WENV181172257
OEIV010565432
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
136
210
+
Thr
GGT
[ENA]
¢þ
>WENV170576421
FRDC01000594
[FRDC] freshwater metagenome; water
48340
48414
+
Thr
GGT
[ENA]
¢þ
>WENV170577693
FSSH01000541
[FSSH] freshwater metagenome; drinking water
75547
75621
+
Thr
GGT
[ENA]
¢þ
>WENV170714170
LNFM01058575
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2142
2068
-
Thr
GGT
[ENA]
¢þ
>WENV170714362
LNFM01069655
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1836
1910
+
Thr
GGT
[ENA]
¢þ
>W09103394
AAJE01000006
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
65560
65634
+
Thr
GGT
[ENA]
¡û
>C191004327
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
403987
404061
+
Thr
GGT
-
¡û
>W09133594
ACPG01000060
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
567
493
-
Thr
GGT
[ENA]
¡û
>W141565166
JIBI01000028
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
14892
14818
-
Thr
GGT
[ENA]
¡û
>W1910226482
FMWO01000011
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
377
303
-
Thr
GGT
[ENA]
¡û
>W1910338822
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
682836
682910
+
Thr
GGT
[ENA]
¡û
>W1911496612
OCMU01000002
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
484371
484297
-
Thr
GGT
[ENA]
¡û
>W1810389542
PXXU01000010
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
70446
70520
+
Thr
GGT
[ENA]
¡û
>W1810463573
PZZQ01000040
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
227
153
-
Thr
GGT
[ENA]
¡û
>W1810463638
PZZS01000004
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
198568
198642
+
Thr
GGT
[ENA]
¡û
>W1810463670
PZZT01000003
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
182321
182395
+
Thr
GGT
[ENA]
¡û
>W1810464178
QAAE01000004
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
265
191
-
Thr
GGT
[ENA]
¡û
>W1810476845
QAOI01000005
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
181009
181083
+
Thr
GGT
[ENA]
¡û
>W1810477004
QAOL01000051
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
16447
16521
+
Thr
GGT
[ENA]
¡û
>W1810477133
QAOO01000016
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
212
138
-
Thr
GGT
[ENA]
¡û
>W1810628666
QICQ01000047
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
227
153
-
Thr
GGT
[ENA]
¡û
>W1810658846
QJJP01000020
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
220
146
-
Thr
GGT
[ENA]
¡û
>W1810659190
QJJW01000004
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
155659
155733
+
Thr
GGT
[ENA]
¡û
>W1810696321
QLTE01000032
Betaproteobacteria
Nitrosomonas sp. Nm143 [QLTE]
48638
48712
+
Thr
GGT
[ENA]
¡û
>C151082890
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
304395
304321
-
Thr
GGT
[Ensembl]
¡û
>C11115640
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
2122741
2122667
-
Thr
GGT
[Ensembl]
¡û
>C11115660
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
890934
891008
+
Thr
GGT
[Ensembl]
¡û
>C161055572
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
2194704
2194778
+
Thr
GGT
[Ensembl]
¡û
>W1610574681
JZQZ01000018
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
9178
9252
+
Thr
GGT
[ENA]
¡û
>W1610665401
LJWX01000001
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
582932
583006
+
Thr
GGT
[ENA]
¡û
>W1730008910
FNPJ01000049
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
226
152
-
Thr
GGT
[ENA]
¡û
>W1710505706
FMTW01000043
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
13035
13109
+
Thr
GGT
[ENA]
¡û
>W1710527952
FNLN01000015
Betaproteobacteria
Nitrosomonas ureae [FNLN]
70143
70217
+
Thr
GGT
[ENA]
¡û
>W1710528542
FNNH01000024
Betaproteobacteria
Nitrosomonas communis [FNNH]
48634
48708
+
Thr
GGT
[ENA]
¡û
>W1710528789
FNNM01000029
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
13465
13539
+
Thr
GGT
[ENA]
¡û
>W1710529361
FNNX01000010
Betaproteobacteria
Nitrosomonas europaea [FNNX]
70278
70352
+
Thr
GGT
[ENA]
¡û
>W1710529702
FNOE01000002
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
212824
212898
+
Thr
GGT
[ENA]
¡û
>W1710530713
FNOY01000127
Betaproteobacteria
Nitrosomonas halophila [FNOY]
221
147
-
Thr
GGT
[ENA]
¡û
>W1710531601
FNPQ01000100
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
215
141
-
Thr
GGT
[ENA]
¡û
>W1710538921
FNUX01000027
Betaproteobacteria
Nitrosomonas ureae [FNUX]
242
168
-
Thr
GGT
[ENA]
¡û
>W1710541310
FNYF01000044
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
10974
11048
+
Thr
GGT
[ENA]
¡û
>W1710547016
FOCP01000024
Betaproteobacteria
Nitrosomonas marina [FOCP]
50340
50414
+
Thr
GGT
[ENA]
¡û
>W1710548185
FODO01000003
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
180732
180806
+
Thr
GGT
[ENA]
¡û
>W1710551732
FOGH01000126
Betaproteobacteria
Nitrosomonas sp. Nm51 [FOGH]
1007
1081
+
Thr
GGT
[ENA]
¡û
>W1710553920
FOIA01000001
Betaproteobacteria
Nitrosomonas marina [FOIA]
236038
236112
+
Thr
GGT
[ENA]
¡û
>W1710554037
FOID01000010
Betaproteobacteria
Nitrosomonas europaea [FOID]
70278
70352
+
Thr
GGT
[ENA]
¡û
>W1710560169
FONE01000014
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
210
136
-
Thr
GGT
[ENA]
¡û
>W1710565317
FORD01000036
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
284
210
-
Thr
GGT
[ENA]
¡û
>W1710567283
FOSP01000032
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
215
141
-
Thr
GGT
[ENA]
¡û
>W1710569063
FOUB01000051
Betaproteobacteria
Nitrosomonas communis [FOUB]
23607
23681
+
Thr
GGT
[ENA]
¡û
>W1710569229
FOUF01000022
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
60929
61003
+
Thr
GGT
[ENA]
¡û
>W1710573506
FOXN01000028
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
14062
13988
-
Thr
GGT
[ENA]
¡û
>W1710578269
FPBL01000003
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
291
217
-
Thr
GGT
[ENA]
¡û
>W1710578951
FPBZ01000001
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
38673
38599
-
Thr
GGT
[ENA]
¡û
>W1710600398
FUWK01000009
Betaproteobacteria
Nitrosomonas europaea [FUWK]
70341
70415
+
Thr
GGT
[ENA]
¡û
>W1710691916
JZQZ01000018
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
9178
9252
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK