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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338977 (14 seq.)
>WENV180301316
OBJE01008359
[OBJE] human gut metagenome; faeces
317
392
+
Thr
CGT
[ENA]
¡û
>WENV180699989
ODDM01044019
[ODDM] human metagenome; G_DNA_Stool
92
17
-
Thr
CGT
[ENA]
¡û
>WENV180747965
ODHN01031861
[ODHN] human metagenome; G_DNA_Stool
332
407
+
Thr
CGT
[ENA]
¡û
>WENV180767020
ODIF01013016
[ODIF] human metagenome; G_DNA_Stool
791
716
-
Thr
CGT
[ENA]
¡û
>WENV180767078
ODIF01021826
[ODIF] human metagenome; G_DNA_Stool
501
574
+
Thr
CGT
[ENA]
¡û
>WENV180915857
ODTB01014897
[ODTB] human metagenome; G_DNA_Stool
10
85
+
Thr
CGT
[ENA]
¡û
>WENV181510021
OGGQ01023097
[OGGQ] metagenome; Human gut stool
459
534
+
Thr
CGT
[ENA]
¡û
>WENV181542093
OGIE01000495
[OGIE] metagenome; Human gut stool
46333
46408
+
Thr
CGT
[ENA]
¡û
>WENV181547276
OGII01011862
[OGII] metagenome; Human gut stool
1299
1224
-
Thr
CGT
[ENA]
¡û
>WENV181564806
OGJH01034916
[OGJH] metagenome; Human gut stool
910
835
-
Thr
CGT
[ENA]
¡û
>WENV182705686
OJOV01003397
[OJOV] human gut metagenome; stool sample
7853
7778
-
Thr
CGT
[ENA]
¡û
>WENV182741296
OJQM01011739
[OJQM] human gut metagenome; stool sample
266
341
+
Thr
CGT
[ENA]
¡û
>WENV183025619
OLFT01032166
[OLFT] human gut metagenome; faeces
93
168
+
Thr
CGT
[ENA]
¡û
>WENV183755677
PPYE01110848
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2984
3059
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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