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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339303 (124 seq.)
>W1711116577
LUCI01000041
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
90527
90601
+
Thr
TGT
[ENA]
¡û
>W1711116618
LUCJ01000016
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
519995
520069
+
Thr
TGT
[ENA]
¡û
>W1711143175
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
359105
359031
-
Thr
TGT
[ENA]
¡û
>W1711466210
MJMD01000130
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
119228
119302
+
Thr
TGT
[ENA]
¡û
>W1711466251
MJME01000101
Alphaproteobacteria
Novacetimonas hansenii [MJME]
25801
25875
+
Thr
TGT
[ENA]
¡û
>W1711466261
MJMF01000011
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
11936
12010
+
Thr
TGT
[ENA]
¡û
>C171032879
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
2830933
2830859
-
Thr
TGT
-
¡û
>C171032942
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2489497
2489423
-
Thr
TGT
-
¡û
>C171100626
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2348806
2348880
+
Thr
TGT
-
¡û
>C171108892
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
46112
46038
-
Thr
TGT
-
¡û
>C171119409
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2810852
2810926
+
Thr
TGT
-
¡û
>W131160224
AQWK01000006
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
199215
199289
+
Thr
TGT
[ENA]
¡û
>W131240812
BAON01000020
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
18282
18208
-
Thr
TGT
[ENA]
¡û
>W131241385
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
44773
44847
+
Thr
TGT
[ENA]
¡û
>C010068
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
1561143
1561069
-
Thr
TGT
[Ensembl]
¡û
>WENV180248142
OBEQ010087685
[OBEQ] groundwater metagenome; groundwater
706
632
-
Thr
TGT
[ENA]
¢þ
>WENV180691443
OCZS010124535
[OCZS] soil metagenome; soil
812
883
+
Thr
TGT
[ENA]
¢þ
>W141078097
ATHO01000070
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
85540
85466
-
Thr
TGT
[ENA]
¡û
>WENV181192090
OEPS010401444
[OEPS] soil metagenome; soil
236
307
+
Thr
TGT
[ENA]
¢þ
>WENV181295331
OFHI01020860
[OFHI] soil metagenome; Clay
37
110
+
Thr
TGT
[ENA]
¢þ
>W141195260
AYTY01000116
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
18680
18606
-
Thr
TGT
[ENA]
¡û
>W141229940
BASM01000022
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
18286
18212
-
Thr
TGT
[ENA]
¡û
>W141402024
JDTI01000193
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
141355
141429
+
Thr
TGT
[ENA]
¡û
>W141484898
JFYY01000017
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
29940
29866
-
Thr
TGT
[ENA]
¡û
>W141485420
JFZJ01000017
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
14977
14903
-
Thr
TGT
[ENA]
¡û
>C181103443
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
3095562
3095488
-
Thr
TGT
-
¡û
>C181221216
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
1561149
1561075
-
Thr
TGT
-
¡û
>C191023988
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
853296
853222
-
Thr
TGT
-
¡û
>C191150961
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2429977
2430051
+
Thr
TGT
-
¡û
>C191157851
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
488310
488384
+
Thr
TGT
-
¡û
>W141726104
JNAB01000028
Alphaproteobacteria
Kozakia baliensis [JNAB]
131085
131159
+
Thr
TGT
[ENA]
¡û
>W141726170
JNAC01000165
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
42843
42769
-
Thr
TGT
[ENA]
¡û
>W1910015225
BDLU01000056
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
37516
37590
+
Thr
TGT
[ENA]
¡û
>W1910015273
BDLW01000028
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
37627
37701
+
Thr
TGT
[ENA]
¡û
>W1910181413
BJLY01000006
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
18668
18594
-
Thr
TGT
[ENA]
¡û
>W1910183183
BJNM01000018
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
42361
42435
+
Thr
TGT
[ENA]
¡û
>W1910183204
BJNN01000023
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
16020
16094
+
Thr
TGT
[ENA]
¡û
>W1910694758
MDTO01000334
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
16172
16098
-
Thr
TGT
[ENA]
¡û
>W1910695613
MDVY01000209
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
35109
35183
+
Thr
TGT
[ENA]
¡û
>W1910695632
MDVZ01000013
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
16644
16570
-
Thr
TGT
[ENA]
¡û
>W1910929249
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
6273
6347
+
Thr
TGT
[ENA]
¡û
>W1910972028
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
460736
460810
+
Thr
TGT
[ENA]
¡û
>W1910990438
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
53656
53582
-
Thr
TGT
[ENA]
¡û
>W1910990485
NKTY01000010
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
3786
3712
-
Thr
TGT
[ENA]
¡û
>W1910990514
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
405072
405146
+
Thr
TGT
[ENA]
¡û
>W1910990591
NKUA01000013
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
105148
105222
+
Thr
TGT
[ENA]
¡û
>W1910990629
NKUB01000007
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
78434
78508
+
Thr
TGT
[ENA]
¡û
>W1910990682
NKUC01000019
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
38425
38499
+
Thr
TGT
[ENA]
¡û
>W1910990730
NKUD01000013
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
42357
42431
+
Thr
TGT
[ENA]
¡û
>W1910990770
NKUE01000007
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
115775
115849
+
Thr
TGT
[ENA]
¡û
>W1910990801
NKUF01000003
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
113917
113991
+
Thr
TGT
[ENA]
¡û
>W1911717706
QQBI01000026
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
7271
7197
-
Thr
TGT
[ENA]
¡û
>W1810000698
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
682571
682497
-
Thr
TGT
[ENA]
¡û
>W1810000740
BEWO01000003
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
4278
4352
+
Thr
TGT
[ENA]
¡û
>SRA1002897
SRR002326.84364
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
190
+
Thr
TGT
[SRA]
>W1810223489
POTC01000011
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
81630
81704
+
Thr
TGT
[ENA]
¡û
>W1810894181
QUWV01000070
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
35285
35359
+
Thr
TGT
[ENA]
¡û
>C151006046
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3064473
3064399
-
Thr
TGT
[Ensembl]
¡û
>C151006206
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
1782936
1782862
-
Thr
TGT
[Ensembl]
¡û
>W10117669
ADTV01000004
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
177665
177739
+
Thr
TGT
[ENA]
¡û
>C11109976
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2353924
2353998
+
Thr
TGT
[Ensembl]
¡û
>C11119016
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2998171
2998245
+
Thr
TGT
[Ensembl]
¡û
>W11122658
ADTV01000004
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
177665
177739
+
Thr
TGT
[ENA]
¡û
>W1511431897
JUFX01000271
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
4020
3946
-
Thr
TGT
[ENA]
¡û
>W11157651
AFCH01000029
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
9397
9323
-
Thr
TGT
[ENA]
¡û
>W11186800
CADP01000076
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
8326
8400
+
Thr
TGT
[ENA]
¡û
>W11186857
CADR01000045
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
6480
6554
+
Thr
TGT
[ENA]
¡û
>W11186913
CADS01000071
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
5746
5672
-
Thr
TGT
[ENA]
¡û
>W11186961
CADT01000014
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
21482
21556
+
Thr
TGT
[ENA]
¡û
>C161003409
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
2057892
2057966
+
Thr
TGT
[Ensembl]
¡û
>C161095991
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
172211
172285
+
Thr
TGT
-
¡û
>W121016345
AGQV01000015
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
40962
41036
+
Thr
TGT
[ENA]
¡û
>W121034254
AHKI01000013
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
34281
34355
+
Thr
TGT
[ENA]
¡û
>W121123435
BADZ01000015
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
18437
18363
-
Thr
TGT
[ENA]
¡û
>W1610040648
BALE01000004
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
8972
8898
-
Thr
TGT
[ENA]
¡û
>W1610041086
BANE01000093
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
12300
12374
+
Thr
TGT
[ENA]
¡û
>W1610041129
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
36508
36582
+
Thr
TGT
[ENA]
¡û
>W1610041183
BANG01000020
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
45333
45407
+
Thr
TGT
[ENA]
¡û
>W1610041205
BANH01000006
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
45317
45391
+
Thr
TGT
[ENA]
¡û
>W1610041276
BANI01000184
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
5958
6032
+
Thr
TGT
[ENA]
¡û
>W1610041293
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
53585
53511
-
Thr
TGT
[ENA]
¡û
>W1610070881
BCTP01000007
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
97690
97764
+
Thr
TGT
[ENA]
¡û
>W1610187957
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
366328
366402
+
Thr
TGT
[ENA]
¡û
>C131009974
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1705560
1705486
-
Thr
TGT
[Ensembl]
¡û
>W1610623991
LHZB01000102
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
26832
26906
+
Thr
TGT
[ENA]
¡û
>W1610624111
LHZD01000007
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
18711
18637
-
Thr
TGT
[ENA]
¡û
>W1610624164
LHZE01000067
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
17590
17664
+
Thr
TGT
[ENA]
¡û
>W1610624261
LHZG01000158
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
19714
19640
-
Thr
TGT
[ENA]
¡û
>W1610624297
LHZH01000093
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
11156
11082
-
Thr
TGT
[ENA]
¡û
>W1610624357
LHZI01001561
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2562
2636
+
Thr
TGT
[ENA]
¡û
>W1610624391
LHZJ01000065
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
43398
43472
+
Thr
TGT
[ENA]
¡û
>W1610624430
LHZK01000063
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
4308
4382
+
Thr
TGT
[ENA]
¡û
>W1610624479
LHZL01000130
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
2225
2299
+
Thr
TGT
[ENA]
¡û
>W1610624526
LHZM01000074
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
45397
45471
+
Thr
TGT
[ENA]
¡û
>W1610624617
LHZO01000053
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
63462
63388
-
Thr
TGT
[ENA]
¡û
>W1610624661
LHZP01000015
Alphaproteobacteria
Gluconobacter roseus [LHZP]
18702
18628
-
Thr
TGT
[ENA]
¡û
>W1610624804
LHZS01000091
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
18229
18155
-
Thr
TGT
[ENA]
¡û
>W1610624974
LHZW01000043
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
42397
42471
+
Thr
TGT
[ENA]
¡û
>W1610927936
LUCI01000041
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
90527
90601
+
Thr
TGT
[ENA]
¡û
>W1610927977
LUCJ01000016
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
519995
520069
+
Thr
TGT
[ENA]
¡û
>W1610954183
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
359105
359031
-
Thr
TGT
[ENA]
¡û
>W1710037846
BALE01000004
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
8972
8898
-
Thr
TGT
[ENA]
¡û
>W1710038284
BANE01000093
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
12300
12374
+
Thr
TGT
[ENA]
¡û
>W1710038327
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
36508
36582
+
Thr
TGT
[ENA]
¡û
>W1710038381
BANG01000020
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
45333
45407
+
Thr
TGT
[ENA]
¡û
>W1710038403
BANH01000006
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
45317
45391
+
Thr
TGT
[ENA]
¡û
>W1710038474
BANI01000184
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
5958
6032
+
Thr
TGT
[ENA]
¡û
>W1710038491
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
53585
53511
-
Thr
TGT
[ENA]
¡û
>W1710068203
BCTP01000007
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
97690
97764
+
Thr
TGT
[ENA]
¡û
>W1710189573
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
366328
366402
+
Thr
TGT
[ENA]
¡û
>W1710755109
LHZB01000102
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
26832
26906
+
Thr
TGT
[ENA]
¡û
>W1710755229
LHZD01000007
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
18711
18637
-
Thr
TGT
[ENA]
¡û
>W1710755282
LHZE01000067
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
17590
17664
+
Thr
TGT
[ENA]
¡û
>W1710755379
LHZG01000158
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
19714
19640
-
Thr
TGT
[ENA]
¡û
>W1710755415
LHZH01000093
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
11156
11082
-
Thr
TGT
[ENA]
¡û
>W1710755475
LHZI01001561
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2562
2636
+
Thr
TGT
[ENA]
¡û
>W1710755509
LHZJ01000065
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
43398
43472
+
Thr
TGT
[ENA]
¡û
>W1710755548
LHZK01000063
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
4308
4382
+
Thr
TGT
[ENA]
¡û
>W1710755597
LHZL01000130
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
2225
2299
+
Thr
TGT
[ENA]
¡û
>W1710755644
LHZM01000074
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
45397
45471
+
Thr
TGT
[ENA]
¡û
>W1710755735
LHZO01000053
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
63462
63388
-
Thr
TGT
[ENA]
¡û
>W1710755779
LHZP01000015
Alphaproteobacteria
Gluconobacter roseus [LHZP]
18702
18628
-
Thr
TGT
[ENA]
¡û
>W1710755922
LHZS01000091
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
18229
18155
-
Thr
TGT
[ENA]
¡û
>W1710756092
LHZW01000043
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
42397
42471
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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