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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339314 (15 seq.)
>W1711666484
MRBY01000070
Cyanobacteriota
[Limnothrix rosea] IAM M-220 IAM M-220 [MRBY]
13539
13610
+
Val
TAC
[ENA]
¡û
>WENV180588634
OCOP01125529
[OCOP] marine metagenome; water
287
358
+
Val
TAC
[ENA]
¢þ
>WENV181409899
OGCI01000843
[OGCI] hot springs metagenome; Hot spring water
23891
23965
+
Val
TAC
[ENA]
¢þ
>W141231469
BAUB01000003
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
178659
178730
+
Val
TAC
[ENA]
¡û
>W141234765
BAWS01000014
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
38747
38818
+
Val
TAC
[ENA]
¡û
>C08010867
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
2796655
2796584
-
Val
TAC
[Ensembl]
¡û
>C181003869
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
2608462
2608533
+
Val
TAC
-
¡û
>W1810047901
PCGE01000038
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
85387
85458
+
Val
TAC
[ENA]
¡û
>C161063999
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
2798845
2798774
-
Val
TAC
-
¡û
>C161097320
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
2833814
2833743
-
Val
TAC
[Ensembl]
¡û
>C161097364
CP016477
Cyanobacteriota
Picosynechococcus sp. PCC 7117 [CP016477]
2826000
2825929
-
Val
TAC
[Ensembl]
¡û
>C161097405
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
2826430
2826359
-
Val
TAC
-
¡û
>C131010442
CP003946
Cyanobacteriota
[Leptolyngbya] sp. PCC 7376 [CP003946]
967927
967998
+
Val
TAC
[Ensembl]
¡û
>W1710608995
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
2382686
2382615
-
Val
TAC
[ENA]
¡û
>W1710609639
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
1636054
1635983
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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