This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339335 (92 seq.)
>W1710799946
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
193918
193844
-
Gly
TCC
[ENA]
¡û
>W1710804019
LJYX01000021
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
640083
640009
-
Gly
TCC
[ENA]
¡û
>W1710996644
LQBP01000004
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
287767
287693
-
Gly
TCC
[ENA]
¡û
>W1711029628
LRFI01000035
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1711065270
LSBQ01000010
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
473
399
-
Gly
TCC
[ENA]
¡û
>W131177231
ARKQ01000028
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
71137
71211
+
Gly
TCC
[ENA]
¡û
>W1711624640
MPHL01000002
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
536774
536848
+
Gly
TCC
[ENA]
¡û
>W1711767384
MUZU01000003
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
339
265
-
Gly
TCC
[ENA]
¡û
>W1711767477
MUZV01000011
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
103185
103259
+
Gly
TCC
[ENA]
¡û
>W1711947427
NBOC01000003
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
136341
136267
-
Gly
TCC
[ENA]
¡û
>W1711947510
NBOD01000007
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
103302
103376
+
Gly
TCC
[ENA]
¡û
>W1711947558
NBOE01000004
Gammaproteobacteria
Colwellia polaris [NBOE]
290490
290564
+
Gly
TCC
[ENA]
¡û
>W1711947734
NBOG01000009
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
163442
163516
+
Gly
TCC
[ENA]
¡û
>C171034502
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
1715291
1715217
-
Gly
TCC
-
¡û
>C171108352
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2175250
2175324
+
Gly
TCC
-
¡û
>C023208
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
3206963
3206889
-
Gly
TCC
[Ensembl]
¡û
>WENV180376819
OBOM01103185
[OBOM] marine metagenome; Seawater
415
341
-
Gly
TCC
[ENA]
¢þ
>WENV180595610
OCPE01018395
[OCPE] marine metagenome; ENVO.00002150
133
207
+
Gly
TCC
[ENA]
¢þ
>WENV180595809
OCPF01046296
[OCPF] marine metagenome; ENVO.00002150
113
39
-
Gly
TCC
[ENA]
¢þ
>WENV180650330
OCSY01008209
[OCSY] marine metagenome; 30 L Plastic container
297
371
+
Gly
TCC
[ENA]
¢þ
>WENV182540173
OJAE01000509
[OJAE] seawater metagenome; Sea water
742
816
+
Gly
TCC
[ENA]
¢þ
>WENV182540177
OJAE01000509
[OJAE] seawater metagenome; Sea water
367
293
-
Gly
TCC
[ENA]
¢þ
>WENV182540201
OJAF01000007
[OJAF] seawater metagenome; Sea water
1619
1545
-
Gly
TCC
[ENA]
¢þ
>WENV182541844
OJAU01007270
[OJAU] seawater metagenome; Sea water
1229
1155
-
Gly
TCC
[ENA]
¢þ
>WENV182543474
OJBB01000606
[OJBB] seawater metagenome; Sea water
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV182551646
OJCF01001500
[OJCF] seawater metagenome; Sea water
387
461
+
Gly
TCC
[ENA]
¢þ
>WENV182551764
OJCH01006272
[OJCH] seawater metagenome; Sea water
152
226
+
Gly
TCC
[ENA]
¢þ
>WENV182552381
OJCK01000003
[OJCK] seawater metagenome; Sea water
304
230
-
Gly
TCC
[ENA]
¢þ
>WENV182554005
OJCS01001610
[OJCS] seawater metagenome; Sea water
516
590
+
Gly
TCC
[ENA]
¢þ
>WENV182554633
OJCW01000256
[OJCW] seawater metagenome; Sea water
1062
988
-
Gly
TCC
[ENA]
¢þ
>WENV182558644
OJDN01000141
[OJDN] seawater metagenome; Sea water
27519
27593
+
Gly
TCC
[ENA]
¢þ
>WENV182559130
OJDO01001838
[OJDO] seawater metagenome; Sea water
3572
3498
-
Gly
TCC
[ENA]
¢þ
>WENV182559990
OJDR01000096
[OJDR] seawater metagenome; Sea water
36992
37066
+
Gly
TCC
[ENA]
¢þ
>WENV182560214
OJDT01009116
[OJDT] seawater metagenome; Sea water
263
337
+
Gly
TCC
[ENA]
¢þ
>WENV182563992
OJED01014208
[OJED] seawater metagenome; Sea water
403
329
-
Gly
TCC
[ENA]
¢þ
>WENV182568182
OJER01000178
[OJER] seawater metagenome; Sea water
2036
2110
+
Gly
TCC
[ENA]
¢þ
>WENV182568541
OJEV01001243
[OJEV] seawater metagenome; Sea water
768
842
+
Gly
TCC
[ENA]
¢þ
>WENV182568683
OJEW01000245
[OJEW] seawater metagenome; Sea water
81
155
+
Gly
TCC
[ENA]
¢þ
>WENV182568934
OJEX01004528
[OJEX] seawater metagenome; Sea water
1263
1189
-
Gly
TCC
[ENA]
¢þ
>WENV182569627
OJFA01000425
[OJFA] seawater metagenome; Sea water
196
270
+
Gly
TCC
[ENA]
¢þ
>WENV182572818
OJFM01020352
[OJFM] seawater metagenome; Sea water
201
275
+
Gly
TCC
[ENA]
¢þ
>WENV182575187
OJFU01000552
[OJFU] seawater metagenome; Sea water
592
518
-
Gly
TCC
[ENA]
¢þ
>WENV182575982
OJFX01001068
[OJFX] seawater metagenome; Sea water
8706
8780
+
Gly
TCC
[ENA]
¢þ
>WENV182577573
OJGG01006702
[OJGG] seawater metagenome; Sea water
259
333
+
Gly
TCC
[ENA]
¢þ
>WENV182578571
OJGO01001370
[OJGO] seawater metagenome; Sea water
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV182588227
OJHP01002170
[OJHP] seawater metagenome; Sea water
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV182588333
OJHR01004339
[OJHR] seawater metagenome; Sea water
147
221
+
Gly
TCC
[ENA]
¢þ
>WENV182591339
OJIL01021213
[OJIL] seawater metagenome; Sea water
270
344
+
Gly
TCC
[ENA]
¢þ
>WENV182593265
OJIT01017477
[OJIT] seawater metagenome; Sea water
647
720
+
Gly
TCC
[ENA]
¢þ
>WENV183053759
OLGQ01003302
[OLGQ] seawater metagenome; Sea water
249
323
+
Gly
TCC
[ENA]
¢þ
>WENV183057936
OLHM01026717
[OLHM] seawater metagenome; Sea water
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV183057969
OLHN01000197
[OLHN] seawater metagenome; Sea water
538
464
-
Gly
TCC
[ENA]
¢þ
>WENV170022406
BCQK01009408
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
202
128
-
Gly
TCC
[ENA]
¢þ
>WENV170266648
CERE01097122
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2026
2100
+
Gly
TCC
[ENA]
¢þ
>WENV170704337
LLEJ01004110
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
803
877
+
Gly
TCC
[ENA]
¢þ
>WENV170780347
MAAA01029571
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
842
916
+
Gly
TCC
[ENA]
¢þ
>WENV170781036
MAAB01029144
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
10636
10710
+
Gly
TCC
[ENA]
¢þ
>WENV170781608
MAAB01038729
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
318
244
-
Gly
TCC
[ENA]
¢þ
>WENV170781793
MAAC01000455
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7182
7108
-
Gly
TCC
[ENA]
¢þ
>WENV170782456
MAAC01010050
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3487
3561
+
Gly
TCC
[ENA]
¢þ
>C181169910
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
230740
230814
+
Gly
TCC
-
¡û
>W141562492
JHZF01000016
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
36764
36690
-
Gly
TCC
[ENA]
¡û
>W1910285308
FREZ01000002
Alphaproteobacteria
Ruegeria sp. Alg231-54 [FREZ]
299002
299076
+
Gly
TCC
[ENA]
¡û
>W1910442884
FWFP01000002
Alphaproteobacteria
Ruegeria meonggei CECT 8411 [FWFP]
239718
239644
-
Gly
TCC
[ENA]
¡û
>W1911237186
NSBT01000037
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
705037
704963
-
Gly
TCC
[ENA]
¡û
>W1911239581
NSDV01000013
Alphaproteobacteria
Paracoccaceae bacterium La 6 [NSDV]
3330690
3330616
-
Gly
TCC
[ENA]
¡û
>W1911539042
OMPH01000030
Alphaproteobacteria
Ruegeria sp. AU67 [OMPH]
179005
178931
-
Gly
TCC
[ENA]
¡û
>W1911770217
QXIO01000004
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
441
367
-
Gly
TCC
[ENA]
¡û
>W1810155117
PJAI01000091
Gammaproteobacteria
Colwellia echini A3T [PJAI]
270
196
-
Gly
TCC
[ENA]
¡û
>W1810725025
QOCF01000014
Alphaproteobacteria
Ruegeria sp. A3M17 [QOCF]
408809
408883
+
Gly
TCC
[ENA]
¡û
>W1810735870
QOLD01000030
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
3506
3580
+
Gly
TCC
[ENA]
¡û
>W1810887019
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
2229156
2229082
-
Gly
TCC
[ENA]
¡û
>W1810887058
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
311023
311097
+
Gly
TCC
[ENA]
¡û
>W1810887151
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
301146
301220
+
Gly
TCC
[ENA]
¡û
>C151006152
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
3486576
3486650
+
Gly
TCC
[Ensembl]
¡û
>W1511322941
JQED01000005
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
325426
325352
-
Gly
TCC
[ENA]
¡û
>W1511533799
JYNI01000110
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
1137
1063
-
Gly
TCC
[ENA]
¡û
>W1511533836
JYNJ01000138
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
3458
3532
+
Gly
TCC
[ENA]
¡û
>C161052262
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
4020637
4020563
-
Gly
TCC
[Ensembl]
¡û
>W1610092553
CYPS01000067
Alphaproteobacteria
Ruegeria atlantica [CYPS]
406213
406287
+
Gly
TCC
[ENA]
¡û
>W1610092561
CYPU01000021
Alphaproteobacteria
Ruegeria atlantica [CYPU]
36467
36541
+
Gly
TCC
[ENA]
¡û
>W1610094943
CYUD01000001
Alphaproteobacteria
Ruegeria denitrificans CECT 5091 [CYUD]
339535
339609
+
Gly
TCC
[ENA]
¡û
>W1610663903
LJVG01000044
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
193918
193844
-
Gly
TCC
[ENA]
¡û
>W1610667876
LJYX01000021
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
640083
640009
-
Gly
TCC
[ENA]
¡û
>W1610851301
LQBP01000004
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
287767
287693
-
Gly
TCC
[ENA]
¡û
>W1610877896
LRFI01000035
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1610906059
LSBQ01000010
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
473
399
-
Gly
TCC
[ENA]
¡û
>W1710015455
AQQR01000013
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
107781
107707
-
Gly
TCC
[ENA]
¡û
>W1710087377
BDQM01000049
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
443
369
-
Gly
TCC
[ENA]
¡û
>W1710095808
CYPS01000067
Alphaproteobacteria
Ruegeria atlantica [CYPS]
406213
406287
+
Gly
TCC
[ENA]
¡û
>W1710095816
CYPU01000021
Alphaproteobacteria
Ruegeria atlantica [CYPU]
36467
36541
+
Gly
TCC
[ENA]
¡û
>W1710545257
FOBI01000010
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
343
269
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK