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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339400 (79 seq.)
>W1710817680
LKLZ01000003
Bacillota
Lactiplantibacillus plantarum WJL [LKLZ]
391334
391260
-
Asn
GTT
[ENA]
¡û
>W1711092352
LTEA01000023
Bacillota
Pediococcus damnosus [LTEA]
18328
18255
-
Asn
GTT
[ENA]
¡û
>W1711132737
LUWI01000005
Bacillota
Lactiplantibacillus plantarum [LUWI]
136583
136509
-
Asn
GTT
[ENA]
¡û
>W1711133381
LUWT01000007
Bacillota
Lactiplantibacillus plantarum [LUWT]
233036
233110
+
Asn
GTT
[ENA]
¡û
>W1711134640
LUXN01000043
Bacillota
Lactiplantibacillus plantarum [LUXN]
39781
39707
-
Asn
GTT
[ENA]
¡û
>W1711258433
LYUK01000002
Bacillota
Lactiplantibacillus plantarum [LYUK]
41114
41040
-
Asn
GTT
[ENA]
¡û
>W1711461921
MJHJ01000010
Bacillota
Lactiplantibacillus plantarum [MJHJ]
12896
12970
+
Asn
GTT
[ENA]
¡û
>W1711461973
MJHK01000011
Bacillota
Lactiplantibacillus plantarum [MJHK]
12811
12885
+
Asn
GTT
[ENA]
¡û
>W1711485536
MKEA01000014
Bacillota
Lactiplantibacillus plantarum [MKEA]
46536
46610
+
Asn
GTT
[ENA]
¡û
>W1711485742
MKED01000046
Bacillota
Lactiplantibacillus plantarum [MKED]
14892
14965
+
Asn
GTT
[ENA]
¡û
>W1711487301
MKFX01000015
Bacillota
Lactiplantibacillus plantarum [MKFX]
12945
13019
+
Asn
GTT
[ENA]
¡û
>C171026323
CP013749
Bacillota
Lactiplantibacillus plantarum KP [CP013749]
649214
649288
+
Asn
GTT
-
¡û
>C171026396
CP013753
Bacillota
Lactiplantibacillus plantarum DF [CP013753]
1024335
1024409
+
Asn
GTT
-
¡û
>C171034156
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
848684
848759
+
Asn
GTT
-
¡û
>C171113847
CP020861
Bacillota
Lactiplantibacillus plantarum JBE490 [CP020861]
2169505
2169578
+
Asn
GTT
-
¡û
>W141096449
AVFJ01000027
Bacillota
Lactiplantibacillus plantarum 2025 [AVFJ]
6951
6878
-
Asn
GTT
[ENA]
¡û
>W141147040
AWWK01000018
Bacillota
Lactiplantibacillus fabifermentans T30PCM01 [AWWK]
30108
30181
+
Asn
GTT
[ENA]
¡û
>WENV181681993
OGOU01001847
[OGOU] human gut metagenome; faeces
3022
2948
-
Asn
GTT
[ENA]
¢þ
>WENV181787055
OGRN01011548
[OGRN] human gut metagenome; faeces
2818
2892
+
Asn
GTT
[ENA]
¢þ
>W141180649
AYGX01000606
Bacillota
Lactiplantibacillus fabifermentans DSM 21115 [AYGX]
5605
5532
-
Asn
GTT
[ENA]
¡û
>W141236541
BBIM01000034
Bacillota
Pediococcus inopinatus [BBIM]
117673
117600
-
Asn
GTT
[ENA]
¡û
>WENV183217042
OLQI01000008
[OLQI] human gut metagenome; faeces
235263
235337
+
Asn
GTT
[ENA]
¢þ
>WENV170659107
JXWR01000085
[JXWR] soil metagenome; rice field; ambient CO2
11580
11507
-
Asn
GTT
[ENA]
¢þ
>WENV170659621
JXWR01015507
[JXWR] soil metagenome; rice field; ambient CO2
1951
1878
-
Asn
GTT
[ENA]
¢þ
>PHG181007187
MG744354
Siphoviridae
Lactobacillus phage Satyr (MG744354)
75557
75484
-
Asn
GTT
[ENA]
¡û
>PHG181007249
MG765274
Siphoviridae
Lactobacillus phage Maenad (MG765274)
73482
73409
-
Asn
GTT
[ENA]
¡û
>C181018935
CP016270
Bacillota
Lactiplantibacillus plantarum subsp. plantarum CGMCC 1.557 [CP016270]
1359938
1360013
+
Asn
GTT
-
¡û
>C181042089
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
1327710
1327637
-
Asn
GTT
-
¡û
>C181043581
CP020093
Bacillota
Lactiplantibacillus plantarum K25 [CP020093]
2132909
2132982
+
Asn
GTT
-
¡û
>C181063248
CP022373
Bacillota
Lactiplantibacillus plantarum dm [CP022373]
2187893
2187967
+
Asn
GTT
-
¡û
>C181076841
CP023174
Bacillota
Lactiplantibacillus plantarum BDGP2 [CP023174]
2678201
2678127
-
Asn
GTT
-
¡û
>C181116839
CP025412
Bacillota
Lactiplantibacillus plantarum X7021 [CP025412]
2128240
2128313
+
Asn
GTT
-
¡û
>C181119730
CP025586
Bacillota
Lactiplantibacillus plantarum KC3 [CP025586]
2227761
2227688
-
Asn
GTT
-
¡û
>C191026639
CP024058
Bacillota
Lactiplantibacillus plantarum KACC 92189 [CP024058]
1510989
1511063
+
Asn
GTT
-
¡û
>C191135294
CP035131
Bacillota
Lactiplantibacillus plantarum SRCM103311 [CP035131]
1021595
1021522
-
Asn
GTT
-
¡û
>C191144816
CP035566
Bacillota
Lactiplantibacillus plantarum SRCM103300 [CP035566]
1008958
1008885
-
Asn
GTT
-
¡û
>C191176875
CP040374
Bacillota
Lactiplantibacillus plantarum subsp. plantarum SKO-001 [CP040374]
50384
50311
-
Asn
GTT
-
¡û
>W141695996
JMEL01000238
Bacillota
Lactiplantibacillus plantarum subsp. plantarum [JMEL]
651
724
+
Asn
GTT
[ENA]
¡û
>W1910067168
BEXA01000002
Bacillota
Lentilactobacillus kosonis NBRC111893 [BEXA]
134852
134924
+
Asn
GTT
[ENA]
¡û
>W1910176956
BJDJ01000026
Bacillota
Lactiplantibacillus daowaiensis 203-3 [BJDJ]
35600
35673
+
Asn
GTT
[ENA]
¡û
>W1910177694
BJDY01000004
Bacillota
Lactiplantibacillus mudanjiangensis 11050 [BJDY]
208113
208186
+
Asn
GTT
[ENA]
¡û
>W1910181222
BJLT01000158
Bacillota
Pediococcus damnosus NBRC 3889 [BJLT]
2299
2372
+
Asn
GTT
[ENA]
¡û
>W1910750126
MJHE01000103
Bacillota
Lactiplantibacillus plantarum RI-029 [MJHE]
900
973
+
Asn
GTT
[ENA]
¡û
>W1910752113
MKDX01000031
Bacillota
Lactiplantibacillus plantarum RI-265 [MKDX]
13281
13354
+
Asn
GTT
[ENA]
¡û
>W1910792161
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
1413070
1413143
+
Asn
GTT
[ENA]
¡û
>W1910841681
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
757628
757555
-
Asn
GTT
[ENA]
¡û
>W1910841712
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
1359200
1359273
+
Asn
GTT
[ENA]
¡û
>W1910972077
NKCZ01000127
Bacillota
Lactiplantibacillus plantarum subsp. plantarum SRCM101258 [NKCZ]
78591
78518
-
Asn
GTT
[ENA]
¡û
>W1810078658
PEKI01000020
Bacillota
Lactiplantibacillus plantarum JMCC0013 [PEKI]
44352
44425
+
Asn
GTT
[ENA]
¡û
>W1510765709
JANK01000019
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
31055
30982
-
Asn
GTT
[ENA]
¡û
>W1511679284
LFEE01000008
Bacillota
Lactiplantibacillus herbarum TCF032-E4 [LFEE]
8147
8220
+
Asn
GTT
[ENA]
¡û
>C161040693
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
248291
248218
-
Asn
GTT
-
¡û
>C161040748
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
828185
828112
-
Asn
GTT
-
¡û
>C161040812
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
244967
244894
-
Asn
GTT
-
¡û
>C161040837
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
1634930
1635003
+
Asn
GTT
[Ensembl]
¡û
>C161040923
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
695366
695293
-
Asn
GTT
-
¡û
>C161043276
CP012650
Bacillota
Lactiplantibacillus plantarum HFC8 [CP012650]
894540
894613
+
Asn
GTT
-
¡û
>C161051759
CP013130
Bacillota
Lactiplantibacillus paraplantarum L-ZS9 [CP013130]
50659
50585
-
Asn
GTT
-
¡û
>C161077342
CP014780
Bacillota
Lactiplantibacillus plantarum JBE245 [CP014780]
2193003
2193076
+
Asn
GTT
-
¡û
>C161091801
CP015857
Bacillota
Lactiplantibacillus plantarum LZ227 [CP015857]
302458
302385
-
Asn
GTT
-
¡û
>W1610037309
AZFY01000092
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
5178
5105
-
Asn
GTT
[ENA]
¡û
>W1610037310
AZFY01000092
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
4814
4739
-
Asn
GTT
[ENA]
¡û
>W1610049939
BBFJ01000008
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
96782
96709
-
Asn
GTT
[ENA]
¡û
>W1610049940
BBFJ01000008
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
96666
96591
-
Asn
GTT
[ENA]
¡û
>W1610528290
JQBC01000003
Bacillota
Pediococcus inopinatus [JQBC]
17491
17564
+
Asn
GTT
[ENA]
¡û
>W1610528329
JQBD01000011
Bacillota
Pediococcus damnosus [JQBD]
34812
34885
+
Asn
GTT
[ENA]
¡û
>W1610681668
LKLZ01000003
Bacillota
Lactiplantibacillus plantarum WJL [LKLZ]
391334
391260
-
Asn
GTT
[ENA]
¡û
>W1610926390
LTEA01000023
Bacillota
Pediococcus damnosus [LTEA]
18328
18255
-
Asn
GTT
[ENA]
¡û
>W1610943810
LUWI01000005
Bacillota
Lactiplantibacillus plantarum [LUWI]
136583
136509
-
Asn
GTT
[ENA]
¡û
>W1610944454
LUWT01000007
Bacillota
Lactiplantibacillus plantarum [LUWT]
233036
233110
+
Asn
GTT
[ENA]
¡û
>W1610945713
LUXN01000043
Bacillota
Lactiplantibacillus plantarum [LUXN]
39781
39707
-
Asn
GTT
[ENA]
¡û
>W1611020905
LYUK01000002
Bacillota
Lactiplantibacillus plantarum [LYUK]
41114
41040
-
Asn
GTT
[ENA]
¡û
>W1710034348
AZFY01000092
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
5178
5105
-
Asn
GTT
[ENA]
¡û
>W1710034349
AZFY01000092
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
4814
4739
-
Asn
GTT
[ENA]
¡û
>W1710046338
BBFJ01000008
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
96782
96709
-
Asn
GTT
[ENA]
¡û
>W1710046339
BBFJ01000008
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
96666
96591
-
Asn
GTT
[ENA]
¡û
>W1710629880
JQBC01000003
Bacillota
Pediococcus inopinatus [JQBC]
17491
17564
+
Asn
GTT
[ENA]
¡û
>W1710629919
JQBD01000011
Bacillota
Pediococcus damnosus [JQBD]
34812
34885
+
Asn
GTT
[ENA]
¡û
>W1710716605
LEBR01000037
Bacillota
Lactiplantibacillus plantarum [LEBR]
12954
12880
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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