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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339457 (261 seq.)
>W1710802937
LJYE01000103
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
144828
144902
+
Thr
TGT
[ENA]
¡û
>W1710802994
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
217901
217827
-
Thr
TGT
[ENA]
¡û
>W1710803009
LJYG01000045
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
159818
159892
+
Thr
TGT
[ENA]
¡û
>W1710855056
LLXZ01000127
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
11790
11864
+
Thr
TGT
[ENA]
¡û
>W1710855134
LLYB01000046
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
268764
268838
+
Thr
TGT
[ENA]
¡û
>W1710873383
LMMS01000031
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
99535
99461
-
Thr
TGT
[ENA]
¡û
>W1710875326
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
17538
17464
-
Thr
TGT
[ENA]
¡û
>W1710877766
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
125045
125119
+
Thr
TGT
[ENA]
¡û
>W1710891417
LNCU01000089
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
35062
35136
+
Thr
TGT
[ENA]
¡û
>W1710892403
LNDR01000407
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
16953
17027
+
Thr
TGT
[ENA]
¡û
>W1710893152
LNEM01000004
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 [LNEM]
852
778
-
Thr
TGT
[ENA]
¡û
>W1710899440
LNIY01000104
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
23135
23209
+
Thr
TGT
[ENA]
¡û
>W1711067380
LSEF01000006
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
27034
26960
-
Thr
TGT
[ENA]
¡û
>W1711073017
LSIC01000219
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
41653
41579
-
Thr
TGT
[ENA]
¡û
>W1711124806
LUKO01000166
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
36778
36704
-
Thr
TGT
[ENA]
¡û
>W1711129605
LUUB01000078
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
19723
19797
+
Thr
TGT
[ENA]
¡û
>W1711138874
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
348253
348179
-
Thr
TGT
[ENA]
¡û
>W131186627
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
977402
977328
-
Thr
TGT
[ENA]
¡û
>W1711193127
LWUI01000003
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
92555
92629
+
Thr
TGT
[ENA]
¡û
>W1711206752
LXEM01000029
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
83338
83264
-
Thr
TGT
[ENA]
¡û
>W1711317179
MAXB01000059
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
17739
17665
-
Thr
TGT
[ENA]
¡û
>W1711487037
MKFI01000001
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
835586
835660
+
Thr
TGT
[ENA]
¡û
>W1711613038
MOXO01000643
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
1937
1863
-
Thr
TGT
[ENA]
¡û
>W1711636747
MPVQ01000073
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
258818
258892
+
Thr
TGT
[ENA]
¡û
>W1711928301
NAEX01000179
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
241507
241433
-
Thr
TGT
[ENA]
¡û
>W1711928332
NAEY01000151
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
66322
66248
-
Thr
TGT
[ENA]
¡û
>W1711928390
NAEZ01000169
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
119328
119254
-
Thr
TGT
[ENA]
¡û
>W1711928440
NAFA01000197
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
241528
241454
-
Thr
TGT
[ENA]
¡û
>W1711928493
NAFB01000188
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
115108
115034
-
Thr
TGT
[ENA]
¡û
>W1711928547
NAFC01000177
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
444222
444148
-
Thr
TGT
[ENA]
¡û
>W1711928593
NAFD01000192
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
305482
305408
-
Thr
TGT
[ENA]
¡û
>W1711928631
NAFE01000222
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
48749
48823
+
Thr
TGT
[ENA]
¡û
>W1711928681
NAFF01000110
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
110094
110168
+
Thr
TGT
[ENA]
¡û
>W1711928729
NAFG01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
305646
305572
-
Thr
TGT
[ENA]
¡û
>W1711928780
NAFH01000176
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
305560
305486
-
Thr
TGT
[ENA]
¡û
>W1711928829
NAFI01000187
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
48664
48738
+
Thr
TGT
[ENA]
¡û
>W1711928839
NAFJ01000097
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
4235
4161
-
Thr
TGT
[ENA]
¡û
>W1711928885
NAFK01000118
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
4235
4161
-
Thr
TGT
[ENA]
¡û
>W1711928974
NAFL01000286
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
67965
67891
-
Thr
TGT
[ENA]
¡û
>W1712049617
NFUH01000250
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
11453
11379
-
Thr
TGT
[ENA]
¡û
>C171021122
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
4063472
4063398
-
Thr
TGT
-
¡û
>C171064696
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4607848
4607774
-
Thr
TGT
-
¡û
>C171107651
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
22897
22971
+
Thr
TGT
-
¡û
>C171131971
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
2655165
2655091
-
Thr
TGT
-
¡û
>W131164993
ARBF01000080
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
132100
132026
-
Thr
TGT
[ENA]
¡û
>W131167485
ARDH01000042
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
3261
3187
-
Thr
TGT
[ENA]
¡û
>W131170240
ARFJ01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
156158
156084
-
Thr
TGT
[ENA]
¡û
>W131217316
ATWP01000009
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
28276
28350
+
Thr
TGT
[ENA]
¡û
>W131227251
AUEZ01000091
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
19602
19676
+
Thr
TGT
[ENA]
¡û
>W131227292
AUFA01000026
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
75692
75618
-
Thr
TGT
[ENA]
¡û
>W131228691
AUGD01000009
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
28276
28350
+
Thr
TGT
[ENA]
¡û
>W131164100
ARAG01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1885259
1885333
+
Thr
TGT
[ENA]
¡û
>W131228542
AUGA01000009
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
81908
81834
-
Thr
TGT
[ENA]
¡û
>C003059
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
6063033
6063107
+
Thr
TGT
[Ensembl]
¡û
>C004052
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
5392519
5392593
+
Thr
TGT
[Ensembl]
¡û
>C004119
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
3203779
3203705
-
Thr
TGT
[Ensembl]
¡û
>WENV180023401
FTHV01027908
[FTHV] metagenome; soil
50
124
+
Thr
TGT
[ENA]
¢þ
>W141001307
ADOU01000075
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
857
931
+
Thr
TGT
[ENA]
¡û
>WENV180033640
FTKL01000915
[FTKL] metagenome; soil
1811
1737
-
Thr
TGT
[ENA]
¢þ
>WENV180105241
OAPD01019295
[OAPD] marine metagenome; 2010
492
566
+
Thr
TGT
[ENA]
¢þ
>WENV180343435
OBLK01016312
[OBLK] soil metagenome; Clay
892
818
-
Thr
TGT
[ENA]
¢þ
>W141041853
AMCQ01000859
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
1462
1536
+
Thr
TGT
[ENA]
¡û
>W141043044
AMFB01000009
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
188438
188512
+
Thr
TGT
[ENA]
¡û
>WENV180584721
OCOJ01267441
[OCOJ] soil metagenome; soil
124
198
+
Thr
TGT
[ENA]
¢þ
>W141063654
APJD01000014
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
368832
368906
+
Thr
TGT
[ENA]
¡û
>WENV181166449
OEIU01000315
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
40080
40006
-
Thr
TGT
[ENA]
¢þ
>WENV181166878
OEIU01003654
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3640
3714
+
Thr
TGT
[ENA]
¢þ
>WENV181166983
OEIU01005470
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4604
4530
-
Thr
TGT
[ENA]
¢þ
>WENV181168872
OEIU01854443
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
1
-
Thr
TGT
[ENA]
¢þ
>WENV181296274
OFHJ01020013
[OFHJ] soil metagenome; Clay
487
561
+
Thr
TGT
[ENA]
¢þ
>WENV181307907
OFIS01000028
[OFIS] sludge metagenome; sludge
194532
194606
+
Thr
TGT
[ENA]
¢þ
>WENV181308201
OFIS01000658
[OFIS] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>WENV181311316
OFJB01000763
[OFJB] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>WENV181379395
OFRD01001124
[OFRD] wastewater metagenome; Exp Tend CN 100WW
7994
8068
+
Thr
TGT
[ENA]
¢þ
>WENV181384006
OFRH01005310
[OFRH] wastewater metagenome; Exp Tend NO 100WW
1571
1645
+
Thr
TGT
[ENA]
¢þ
>WENV181385107
OFRI01034266
[OFRI] wastewater metagenome; Exp Tend VB 90WW
598
524
-
Thr
TGT
[ENA]
¢þ
>WENV181385873
OFRL01000029
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
37410
37336
-
Thr
TGT
[ENA]
¢þ
>WENV181399847
OFSF01000061
[OFSF] wastewater metagenome; Exp Tend VB 100WW
37524
37450
-
Thr
TGT
[ENA]
¢þ
>WENV181401318
OFSF01120555
[OFSF] wastewater metagenome; Exp Tend VB 100WW
12
86
+
Thr
TGT
[ENA]
¢þ
>WENV181402389
OFTY01001028
[OFTY] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¢þ
>W141149763
AWZU01000027
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
7394
7320
-
Thr
TGT
[ENA]
¡û
>W141150028
AXAB01000006
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
39510
39436
-
Thr
TGT
[ENA]
¡û
>W141150126
AXAD01000004
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
181385
181459
+
Thr
TGT
[ENA]
¡û
>W141150233
AXAF01000009
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
213086
213160
+
Thr
TGT
[ENA]
¡û
>W141150260
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
133952
133878
-
Thr
TGT
[ENA]
¡û
>W141150329
AXAH01000017
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
170244
170318
+
Thr
TGT
[ENA]
¡û
>W141150380
AXAI01000008
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
247293
247219
-
Thr
TGT
[ENA]
¡û
>W141150710
AXAP01000009
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
96778
96704
-
Thr
TGT
[ENA]
¡û
>W141151007
AXAS01000036
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
55541
55615
+
Thr
TGT
[ENA]
¡û
>W141151051
AXAT01000115
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
659
733
+
Thr
TGT
[ENA]
¡û
>W141151136
AXAV01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
291525
291599
+
Thr
TGT
[ENA]
¡û
>W141151200
AXAW01000014
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
36667
36593
-
Thr
TGT
[ENA]
¡û
>W141151259
AXAX01000034
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
65188
65114
-
Thr
TGT
[ENA]
¡û
>W141151300
AXAY01000025
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
53111
53185
+
Thr
TGT
[ENA]
¡û
>W141151353
AXAZ01000089
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
26353
26279
-
Thr
TGT
[ENA]
¡û
>W141151478
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
517770
517696
-
Thr
TGT
[ENA]
¡û
>W141168843
AXVG01000014
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
473281
473355
+
Thr
TGT
[ENA]
¡û
>W141169196
AXVP01000038
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
71155
71229
+
Thr
TGT
[ENA]
¡û
>W141213997
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1089236
1089310
+
Thr
TGT
[ENA]
¡û
>W141220428
AZXU01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
553649
553723
+
Thr
TGT
[ENA]
¡û
>W141233898
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
525638
525712
+
Thr
TGT
[ENA]
¡û
>WENV182409103
OIFG01001781
[OIFG] human gut metagenome; stool
402
328
-
Thr
TGT
[ENA]
¢þ
>WENV182412647
OIFV01001584
[OIFV] human gut metagenome; stool
654
580
-
Thr
TGT
[ENA]
¢þ
>W141240063
CAFK01000010
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
81503
81577
+
Thr
TGT
[ENA]
¡û
>C08002350
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3328741
3328815
+
Thr
TGT
[Ensembl]
¡û
>W141275958
JADK01000008
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
350095
350169
+
Thr
TGT
[ENA]
¡û
>W141277754
JAEV01000002
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
6086
6160
+
Thr
TGT
[ENA]
¡û
>W141278130
JAFC01000039
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
5879
5953
+
Thr
TGT
[ENA]
¡û
>W141278838
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1025891
1025817
-
Thr
TGT
[ENA]
¡û
>WENV182962861
OKWO01001422
[OKWO] human gut metagenome; stool
1081
1007
-
Thr
TGT
[ENA]
¢þ
>WENV182962957
OKWP01000032
[OKWP] human gut metagenome; stool
126248
126174
-
Thr
TGT
[ENA]
¢þ
>WENV183714614
PDWI01194553
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1159
1085
-
Thr
TGT
[ENA]
¢þ
>WENV183726442
PJQF01200549
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
197
271
+
Thr
TGT
[ENA]
¢þ
>WENV183731163
PJTS01014649
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
170
96
-
Thr
TGT
[ENA]
¢þ
>WENV183731840
PJTT01000237
[PJTT] soil metagenome; Soil (2) enriched on wood chips
41400
41474
+
Thr
TGT
[ENA]
¢þ
>WENV183743235
PJUJ01000196
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
26688
26614
-
Thr
TGT
[ENA]
¢þ
>WENV183744230
PJUK01002540
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1040
966
-
Thr
TGT
[ENA]
¢þ
>WENV183744809
PJUL01000278
[PJUL] feces metagenome; Chicken feces enriched on filter paper
26688
26614
-
Thr
TGT
[ENA]
¢þ
>WENV170000178
AERA01020631
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
225
299
+
Thr
TGT
[ENA]
¢þ
>WENV170576651
FRDC01001269
[FRDC] freshwater metagenome; water
9399
9325
-
Thr
TGT
[ENA]
¢þ
>WENV170680678
LFEF01009444
[LFEF] freshwater metagenome; waterbloom
2215
2289
+
Thr
TGT
[ENA]
¢þ
>WENV170706570
LNAP01004313
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4920
4994
+
Thr
TGT
[ENA]
¢þ
>WENV170710083
LNFM01001131
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
71
-1
-
Thr
TGT
[ENA]
¢þ
>WENV170711045
LNFM01003366
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30690
30764
+
Thr
TGT
[ENA]
¢þ
>WENV170712746
LNFM01017179
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
71
-1
-
Thr
TGT
[ENA]
¢þ
>WENV170712872
LNFM01019217
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4563
4489
-
Thr
TGT
[ENA]
¢þ
>WENV170714124
LNFM01055753
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
24
98
+
Thr
TGT
[ENA]
¢þ
>W09104140
AALJ01000023
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
58518
58592
+
Thr
TGT
[ENA]
¡û
>C181113188
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
6366130
6366204
+
Thr
TGT
-
¡û
>C181178167
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
5620271
5620197
-
Thr
TGT
-
¡û
>C181178193
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
4159918
4159992
+
Thr
TGT
-
¡û
>C181178237
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3981770
3981844
+
Thr
TGT
-
¡û
>C181181563
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
6202454
6202528
+
Thr
TGT
-
¡û
>C181203876
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3348644
3348570
-
Thr
TGT
-
¡û
>C191019690
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
4048536
4048610
+
Thr
TGT
-
¡û
>C191019758
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4070254
4070180
-
Thr
TGT
-
¡û
>C191071696
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
3370165
3370091
-
Thr
TGT
-
¡û
>C191071742
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
2881674
2881600
-
Thr
TGT
-
¡û
>C191092029
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
5998674
5998748
+
Thr
TGT
-
¡û
>C191186632
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
3289303
3289377
+
Thr
TGT
-
¡û
>W1910006621
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
182555
182481
-
Thr
TGT
[ENA]
¡û
>W1910183065
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
447794
447868
+
Thr
TGT
[ENA]
¡û
>W1910183112
BJNL01000012
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
199122
199196
+
Thr
TGT
[ENA]
¡û
>W1910598267
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
3593541
3593467
-
Thr
TGT
[ENA]
¡û
>W1910598968
LBJC01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
176806
176880
+
Thr
TGT
[ENA]
¡û
>W1910598997
LBJM01000055
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
32680
32754
+
Thr
TGT
[ENA]
¡û
>W1910599044
LBJQ01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
33416
33342
-
Thr
TGT
[ENA]
¡û
>W1910611574
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
3351532
3351458
-
Thr
TGT
[ENA]
¡û
>W1910693476
MDEP01000048
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
25178
25252
+
Thr
TGT
[ENA]
¡û
>W1910840254
MZXW01000007
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
17699
17625
-
Thr
TGT
[ENA]
¡û
>W1911245295
NSJY01000017
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
37094
37168
+
Thr
TGT
[ENA]
¡û
>W1911409804
NWTE01000017
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
34290
34364
+
Thr
TGT
[ENA]
¡û
>W1911409829
NWTF01000006
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
201048
200974
-
Thr
TGT
[ENA]
¡û
>W1911409916
NWTG01000012
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
134275
134201
-
Thr
TGT
[ENA]
¡û
>W1911409994
NWTI01000002
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
324062
323988
-
Thr
TGT
[ENA]
¡û
>W1911629530
PSRR01000591
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
2126
2200
+
Thr
TGT
[ENA]
¡û
>W1911629574
PSRS01000211
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
2920
2846
-
Thr
TGT
[ENA]
¡û
>W1911629582
PSRT01000004
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
35139
35065
-
Thr
TGT
[ENA]
¡û
>W1911653525
QDFX01000011
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
92612
92538
-
Thr
TGT
[ENA]
¡û
>W1911798336
QYRN01000004
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
283474
283400
-
Thr
TGT
[ENA]
¡û
>W1911817870
QZMV01000005
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
173999
173925
-
Thr
TGT
[ENA]
¡û
>W1810104406
PGVG01000004
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
319065
318991
-
Thr
TGT
[ENA]
¡û
>W1810289846
PTFE01000002
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
205833
205907
+
Thr
TGT
[ENA]
¡û
>W1810367844
PVYZ01000001
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
1051564
1051638
+
Thr
TGT
[ENA]
¡û
>W1810400099
PYFV01000004
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
256606
256532
-
Thr
TGT
[ENA]
¡û
>W1810400177
PYFW01000017
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
36580
36506
-
Thr
TGT
[ENA]
¡û
>W1810400212
PYFX01000007
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
316452
316378
-
Thr
TGT
[ENA]
¡û
>W1810625698
QHJY01000076
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
1407
1333
-
Thr
TGT
[ENA]
¡û
>W1810625756
QHJZ01000453
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
912
986
+
Thr
TGT
[ENA]
¡û
>W1810789357
QRGO01000001
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
2709710
2709636
-
Thr
TGT
[ENA]
¡û
>C151066561
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4451838
4451764
-
Thr
TGT
[Ensembl]
¡û
>WENV11100536
AERA01020631
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
225
299
+
Thr
TGT
[ENA]
¡û
>W1510973731
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
31574
31500
-
Thr
TGT
[ENA]
¡û
>W1511353637
JRPN01000024
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
94620
94694
+
Thr
TGT
[ENA]
¡û
>W1511508011
JXOF01000187
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
705693
705767
+
Thr
TGT
[ENA]
¡û
>W1511533262
JYMR01000010
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
112561
112487
-
Thr
TGT
[ENA]
¡û
>W1511533332
JYMS01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
446012
446086
+
Thr
TGT
[ENA]
¡û
>W1511533371
JYMT01000039
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
131507
131433
-
Thr
TGT
[ENA]
¡û
>W1511533392
JYMU01000006
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
330162
330236
+
Thr
TGT
[ENA]
¡û
>W1511681419
LFIP01000060
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
13668
13742
+
Thr
TGT
[ENA]
¡û
>W1511681469
LFIQ01000076
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
76809
76735
-
Thr
TGT
[ENA]
¡û
>W1511684025
LFLZ01000011
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
154574
154648
+
Thr
TGT
[ENA]
¡û
>W1511705978
LGTB01000001
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
157211
157137
-
Thr
TGT
[ENA]
¡û
>W1511706719
LGUJ01000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
64906
64832
-
Thr
TGT
[ENA]
¡û
>C121000491
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4428762
4428688
-
Thr
TGT
[Ensembl]
¡û
>C121000749
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
2925055
2924981
-
Thr
TGT
[Ensembl]
¡û
>C161001013
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
180409
180483
+
Thr
TGT
-
¡û
>C161017415
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1419452
1419378
-
Thr
TGT
[Ensembl]
¡û
>C161034231
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
5382694
5382768
+
Thr
TGT
-
¡û
>C161062534
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
4968280
4968354
+
Thr
TGT
[Ensembl]
¡û
>C161097219
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
3515917
3515843
-
Thr
TGT
[Ensembl]
¡û
>C161107856
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6306727
6306653
-
Thr
TGT
-
¡û
>C161107951
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4113162
4113088
-
Thr
TGT
-
¡û
>W121062447
AJJK01001039
Alphaproteobacteria
Bradyrhizobium elkanii 587 [AJJK]
1877
1803
-
Thr
TGT
[ENA]
¡û
>W121065192
AJPV01000111
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
2678
2752
+
Thr
TGT
[ENA]
¡û
>W121065273
AJPW01000592
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
6284
6210
-
Thr
TGT
[ENA]
¡û
>W121036202
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
5206807
5206881
+
Thr
TGT
[ENA]
¡û
>W121036449
AHMB01000064
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
388243
388169
-
Thr
TGT
[ENA]
¡û
>W121065298
AJPX01000390
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
1902
1828
-
Thr
TGT
[ENA]
¡û
>W121065368
AJPY01000706
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
2475
2549
+
Thr
TGT
[ENA]
¡û
>W121065448
AJQA01000304
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
1525
1599
+
Thr
TGT
[ENA]
¡û
>W121065507
AJQB01000712
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
3015
2941
-
Thr
TGT
[ENA]
¡û
>W121065520
AJQC01000068
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
1364
1438
+
Thr
TGT
[ENA]
¡û
>W121065588
AJQD01000451
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
5299
5225
-
Thr
TGT
[ENA]
¡û
>W121065608
AJQE01000052
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
9566
9640
+
Thr
TGT
[ENA]
¡û
>W121065692
AJQF01000408
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
1458
1532
+
Thr
TGT
[ENA]
¡û
>W121065746
AJQG01000312
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
370
444
+
Thr
TGT
[ENA]
¡û
>W121065776
AJQH01000210
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
363
437
+
Thr
TGT
[ENA]
¡û
>W121065835
AJQI01000384
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
2057
2131
+
Thr
TGT
[ENA]
¡û
>W121065885
AJQJ01000391
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
22644
22570
-
Thr
TGT
[ENA]
¡û
>W121065924
AJQK01000234
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
3383
3457
+
Thr
TGT
[ENA]
¡û
>W121065968
AJQL01000287
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
11852
11778
-
Thr
TGT
[ENA]
¡û
>W121085086
AKIY01000214
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
78626
78552
-
Thr
TGT
[ENA]
¡û
>W121127084
CAFH01000158
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
3265
3339
+
Thr
TGT
[ENA]
¡û
>W121127193
CAFJ01000747
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
14135
14061
-
Thr
TGT
[ENA]
¡û
>W1610049407
BBEX01000686
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
723
797
+
Thr
TGT
[ENA]
¡û
>W1610056571
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
6773
6847
+
Thr
TGT
[ENA]
¡û
>W1610056777
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
1564
1490
-
Thr
TGT
[ENA]
¡û
>C131000818
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
5242204
5242278
+
Thr
TGT
[Ensembl]
¡û
>W1610514448
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
112929
112855
-
Thr
TGT
[ENA]
¡û
>W1610514603
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
301661
301735
+
Thr
TGT
[ENA]
¡û
>W1610549138
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1595229
1595303
+
Thr
TGT
[ENA]
¡û
>W1610550325
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2299168
2299094
-
Thr
TGT
[ENA]
¡û
>W1610666794
LJYE01000103
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
144828
144902
+
Thr
TGT
[ENA]
¡û
>W1610666851
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
217901
217827
-
Thr
TGT
[ENA]
¡û
>W1610666866
LJYG01000045
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
159818
159892
+
Thr
TGT
[ENA]
¡û
>W1610717397
LLXZ01000127
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
11790
11864
+
Thr
TGT
[ENA]
¡û
>W1610717475
LLYB01000046
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
268764
268838
+
Thr
TGT
[ENA]
¡û
>W1610735729
LMMS01000031
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
99535
99461
-
Thr
TGT
[ENA]
¡û
>W1610737672
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
17538
17464
-
Thr
TGT
[ENA]
¡û
>W1610740112
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
125045
125119
+
Thr
TGT
[ENA]
¡û
>W1610751782
LNCU01000089
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
35062
35136
+
Thr
TGT
[ENA]
¡û
>W1610752669
LNDR01000407
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 [LNDR]
16953
17027
+
Thr
TGT
[ENA]
¡û
>W1610753418
LNEM01000004
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 [LNEM]
852
778
-
Thr
TGT
[ENA]
¡û
>W1610759843
LNIY01000104
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
23135
23209
+
Thr
TGT
[ENA]
¡û
>W1610907950
LSEF01000006
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
27034
26960
-
Thr
TGT
[ENA]
¡û
>W1610912277
LSIC01000219
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
41653
41579
-
Thr
TGT
[ENA]
¡û
>W1610935778
LUKO01000166
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
36778
36704
-
Thr
TGT
[ENA]
¡û
>W1610940678
LUUB01000078
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
19723
19797
+
Thr
TGT
[ENA]
¡û
>W1610949882
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
348253
348179
-
Thr
TGT
[ENA]
¡û
>W1611061249
MAXB01000059
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
17739
17665
-
Thr
TGT
[ENA]
¡û
>W1710045806
BBEX01000686
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
723
797
+
Thr
TGT
[ENA]
¡û
>W1710053270
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
6773
6847
+
Thr
TGT
[ENA]
¡û
>W1710053476
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
1564
1490
-
Thr
TGT
[ENA]
¡û
>W1710064203
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4197783
4197709
-
Thr
TGT
[ENA]
¡û
>W1710500138
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
112929
112855
-
Thr
TGT
[ENA]
¡û
>W1710500293
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
301661
301735
+
Thr
TGT
[ENA]
¡û
>W1710513049
FMZW01000008
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
86753
86679
-
Thr
TGT
[ENA]
¡û
>W1710516759
FNCU01000017
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
85563
85637
+
Thr
TGT
[ENA]
¡û
>W1710536571
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
1647578
1647652
+
Thr
TGT
[ENA]
¡û
>W1710546009
FOBX01000006
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
382074
382000
-
Thr
TGT
[ENA]
¡û
>W1710546010
FOBX01000006
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
380355
380281
-
Thr
CGT
[ENA]
¡û
>W1710561243
FOOA01000001
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
8488
8562
+
Thr
TGT
[ENA]
¡û
>W1710564285
FOQJ01000012
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
137261
137335
+
Thr
TGT
[ENA]
¡û
>W1710564418
FOQM01000007
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
106463
106537
+
Thr
TGT
[ENA]
¡û
>W1710569817
FOUS01000011
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
261030
261104
+
Thr
TGT
[ENA]
¡û
>W1710571307
FOVU01000004
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
293148
293074
-
Thr
TGT
[ENA]
¡û
>W1710652712
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
1595229
1595303
+
Thr
TGT
[ENA]
¡û
>W1710659051
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2299168
2299094
-
Thr
TGT
[ENA]
¡û
>W1710735580
LGHK01000050
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
23528
23602
+
Thr
TGT
[ENA]
¡û
>W1710735647
LGHL01000104
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
36900
36826
-
Thr
TGT
[ENA]
¡û
Select
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Download Sequence
Representative sequence of each cluster
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